EY665782

Overview
NameEY665782
Unique NameEY665782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.172e-15
Identity = 55/150 (36.67%), Postives = 71/150 (47.33%), Query Frame = 3
Query:   96 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 539
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132          

HSP 2 Score: 25.0238 bits (53), Expect = 1.172e-15
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 1
Query:  658 PSGIFDPLGLGDDP 699
            P G FDPLG   DP
Sbjct:  168 PGGAFDPLGFSKDP 181          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  246 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 578
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWA 164          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 51/140 (36.43%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  207 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA 623
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q       +Y  + +         ++  ++VL+G  EG R A
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRRWA 170          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.320e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3
Query:  540 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGE
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 185          

HSP 2 Score: 30.4166 bits (67), Expect = 7.320e-15
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL +DP
Sbjct:  189 PLYPGGSFDPLGLAEDP 205          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.320e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3
Query:  540 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGE
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 185          

HSP 2 Score: 30.4166 bits (67), Expect = 7.320e-15
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL +DP
Sbjct:  189 PLYPGGSFDPLGLAEDP 205          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.320e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3
Query:  540 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGE
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 183          

HSP 2 Score: 30.4166 bits (67), Expect = 7.320e-15
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL +DP
Sbjct:  187 PLYPGGSFDPLGLAEDP 203          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.320e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3
Query:  540 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGE
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 183          

HSP 2 Score: 30.4166 bits (67), Expect = 7.320e-15
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL +DP
Sbjct:  187 PLYPGGSFDPLGLAEDP 203          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.861e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3
Query:  540 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 641
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGE
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 34          

HSP 2 Score: 30.4166 bits (67), Expect = 7.861e-15
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  649 PIVPSGIFDPLGLGDDP 699
            P+ P G FDPLGL +DP
Sbjct:   38 PLYPGGSFDPLGLAEDP 54          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.060e-13
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 3
Query:  519 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGE 641
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGE 42          

HSP 2 Score: 20.4014 bits (41), Expect = 1.060e-13
Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 1
Query:  652 IVPSGIFDPLGLGDDP 699
            + P G FDPL    DP
Sbjct:   47 LYPGGSFDPLASLTDP 62          
BLAST of EY665782 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.609e-13
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  276 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 503
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          

HSP 2 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 3
Query:  285 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 488
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440          
The following BLAST results are available for this feature:
BLAST of EY665782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB121_HORVU1.172e-1536.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_SOLLC3.528e-1539.29Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY6.019e-1536.43Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2F_SOLLC7.320e-1597.06Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC7.320e-1597.06Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2C_SOLLC7.320e-1597.06Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC7.320e-1597.06Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2D_SOLLC7.861e-1597.06Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB21_RAPSA1.060e-1388.10Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
LH18_EUGGR9.609e-1346.05Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665782 ID=EY665782; Name=EY665782; organism=Citrus sinensis; type=EST; length=858bp
AGAATCCGGGGAACCGCGGTCACGGTCGGGATTCCCGGGTCGACCACGCG
TCCGCTCGAACACTAGAGCTCACCCTTTACTCTGATCATTGTAAAATGGC
AACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACC
TTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGT
AAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGA
CAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGA
CTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCT
GACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAG
ATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCC
GCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAG
ATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCA
CGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAG
CCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGGGCTGACC
CATTGTACCCAGTGGCATCTTTGATCCATTGGGTTTGGGTGATGACCCCC
GAACGCTTTTGCCGAACCCAACGGTTAAGGAACTCAACAAGGAAAGGCGG
CCCAAGCCCCCCCCGTTAGGCCTTCTTCGTACCAGGGCCCATTTCGACCG
GAAGGGGGAACTACCATGAAAATTAGAAACAAAACTGCTGGATAGATACT
GGAACATA
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