FC871922

Overview
NameFC871922
Unique NameFC871922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871922_ssr63 microsatellite FC871922_ssr63:63..74. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3493 contig Csv1_Contig3493:102..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871922 vs. ExPASy Swiss-Prot
Match: SUMO2_MACFA (Small ubiquitin-related modifier 2 OS=Macaca fascicularis GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   90 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 347
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of FC871922 vs. ExPASy Swiss-Prot
Match: SUMO2_HUMAN (Small ubiquitin-related modifier 2 OS=Homo sapiens GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   90 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 347
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of FC871922 vs. ExPASy Swiss-Prot
Match: SUMO2_CRIGR (Small ubiquitin-related modifier 2 OS=Cricetulus griseus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   90 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 347
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of FC871922 vs. ExPASy Swiss-Prot
Match: SUMO2_CHICK (Small ubiquitin-related modifier 2 OS=Gallus gallus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   90 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 347
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of FC871922 vs. ExPASy Swiss-Prot
Match: SUMO2_BOVIN (Small ubiquitin-related modifier 2 OS=Bos taurus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   90 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 347
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of FC871922 vs. ExPASy Swiss-Prot
Match: SMO2A_XENLA (Small ubiquitin-related modifier 2-A OS=Xenopus laevis GN=sumo2-A PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 3
Query:   90 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 350
            D KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    3 DDKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
BLAST of FC871922 vs. ExPASy Swiss-Prot
Match: SUMO3_RAT (Small ubiquitin-related modifier 3 OS=Rattus norvegicus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.682e-18
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 3
Query:   81 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 347
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of FC871922 vs. ExPASy Swiss-Prot
Match: SUMO3_HUMAN (Small ubiquitin-related modifier 3 OS=Homo sapiens GN=SUMO3 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.682e-18
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 3
Query:   81 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 347
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of FC871922 vs. ExPASy Swiss-Prot
Match: SUMO3_CHICK (Small ubiquitin-related modifier 3 OS=Gallus gallus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.682e-18
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 3
Query:   81 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 347
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of FC871922 vs. ExPASy Swiss-Prot
Match: SUMO2_XENTR (Small ubiquitin-related modifier 2 OS=Xenopus tropicalis GN=sumo2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.682e-18
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 3
Query:   90 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 350
            D KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    3 DDKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
The following BLAST results are available for this feature:
BLAST of FC871922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO2_MACFA1.288e-1851.65Small ubiquitin-related modifier 2 OS=Macaca fasci... [more]
SUMO2_HUMAN1.288e-1851.65Small ubiquitin-related modifier 2 OS=Homo sapiens... [more]
SUMO2_CRIGR1.288e-1851.65Small ubiquitin-related modifier 2 OS=Cricetulus g... [more]
SUMO2_CHICK1.288e-1851.65Small ubiquitin-related modifier 2 OS=Gallus gallu... [more]
SUMO2_BOVIN1.288e-1851.65Small ubiquitin-related modifier 2 OS=Bos taurus G... [more]
SMO2A_XENLA1.288e-1851.09Small ubiquitin-related modifier 2-A OS=Xenopus la... [more]
SUMO3_RAT1.682e-1852.22Small ubiquitin-related modifier 3 OS=Rattus norve... [more]
SUMO3_HUMAN1.682e-1852.22Small ubiquitin-related modifier 3 OS=Homo sapiens... [more]
SUMO3_CHICK1.682e-1852.22Small ubiquitin-related modifier 3 OS=Gallus gallu... [more]
SUMO2_XENTR1.682e-1851.09Small ubiquitin-related modifier 2 OS=Xenopus trop... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CG03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871922 ID=FC871922; Name=FC871922; organism=Citrus sinensis; type=EST; length=515bp
CGCAGAAACAAAGATAGGGTAAAATTCAATTCTAAGAACCTGTAAGGATG
TCAGCGACCGGTGGCGGCGGCGGCGGTGGTCAGGAGGAGGACAAGAAGCC
CGTCGATCAGTCGGCGCACATTAACCTCAAAGTCAAGGGCCAGGATGGCA
ATGAGGTGTTTTTTAGAATTAAGCGAAGCACCCAGTTGAAAAAGCTCATG
AATGCCTACTGTGATCGGCAGTCGGTGGAGTTAAACTCTATTGCTTTCTT
GTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTCCAGATGAGCTTGAGA
TGGAGGATGGAGATGAAATTGATGCAATGCTGCATCAGACTGGAGGTGCG
CTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTTGAGCATCGCTGGCGGA
CTTGATGTTTGAGTTTTTTAAATTAGCCTATATCTATGGAAATATTACTG
TAAATGATGACTTGGATCTTATAATTAACTTGAATTTAAGTCAAAAAAAA
AAAAAAAAAAAAAAA
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