FC871922

Overview
NameFC871922
Unique NameFC871922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871922_ssr63 microsatellite FC871922_ssr63:63..74. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3493 contig Csv1_Contig3493:102..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871922 vs. ExPASy Swiss-Prot
Match: SUMO1_DANRE (Small ubiquitin-related modifier 1 OS=Danio rerio GN=sumo1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.274e-15
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 3 
Query:  117 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 347
            +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V +NS+ FLF+G+R+    TP EL MED D I+    QTGG
Sbjct:   20 YIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVPVNSLRFLFEGQRITDNLTPKELGMEDEDVIEVYQEQTGG 96
[Close]
BLAST of FC871922 vs. ExPASy Swiss-Prot
Match: SUMO1_ONCMY (Small ubiquitin-related modifier 1 OS=Oncorhynchus mykiss GN=sumo1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.878e-15
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 3 
Query:   84 EEDKKPVDQSA-------HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 347
            + D KP  Q         +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V ++++ FLF+G+R+    TP EL MED D I+    QTGG
Sbjct:    3 DTDTKPSGQDGGDQKDGEYIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVHMSTLRFLFEGQRISDNHTPKELGMEDEDVIEVYQEQTGG 97
The following BLAST results are available for this feature:
BLAST of FC871922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO1_DANRE2.274e-1550.65Small ubiquitin-related modifier 1 OS=Danio rerio ... [more]
SUMO1_ONCMY3.878e-1543.16Small ubiquitin-related modifier 1 OS=Oncorhynchus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CG03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871922 ID=FC871922; Name=FC871922; organism=Citrus sinensis; type=EST; length=515bp
CGCAGAAACAAAGATAGGGTAAAATTCAATTCTAAGAACCTGTAAGGATG
TCAGCGACCGGTGGCGGCGGCGGCGGTGGTCAGGAGGAGGACAAGAAGCC
CGTCGATCAGTCGGCGCACATTAACCTCAAAGTCAAGGGCCAGGATGGCA
ATGAGGTGTTTTTTAGAATTAAGCGAAGCACCCAGTTGAAAAAGCTCATG
AATGCCTACTGTGATCGGCAGTCGGTGGAGTTAAACTCTATTGCTTTCTT
GTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTCCAGATGAGCTTGAGA
TGGAGGATGGAGATGAAATTGATGCAATGCTGCATCAGACTGGAGGTGCG
CTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTTGAGCATCGCTGGCGGA
CTTGATGTTTGAGTTTTTTAAATTAGCCTATATCTATGGAAATATTACTG
TAAATGATGACTTGGATCTTATAATTAACTTGAATTTAAGTCAAAAAAAA
AAAAAAAAAAAAAAA
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