CX675019

Overview
NameCX675019
Unique NameCX675019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4331 contig Csv1_Contig4331:16..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PHS1_DICDI (Glycogen phosphorylase 1 OS=Dictyostelium discoideum GN=glpV PE=1 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 2.307e-45
Identity = 93/195 (47.69%), Postives = 134/195 (68.72%), Query Frame = -2
Query:  221 LKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYN-YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 802
            LKV+F+ +YNVS+A++++PAS+++Q ISTAG EASGTSNMKF MNG ++IGTLDGANVEI +EVG+EN F+FG R  E+   R++ +  +   D R +EV   ++ G FG  + +  ++ SL        +D++L  +DFP YL+ Q  VDE + DQ  W + SI+N+A +  FSSDR + EYA  IW+I P E+
Sbjct:  657 LKVVFIANYNVSIAQVIVPASDINQQISTAGTEASGTSNMKFTMNGSLIIGTLDGANVEIAEEVGQENMFIFGLRTSEVEAAREKMTNKEVNIDPRLQEVFLNIELGTFGPPDVFRPILDSLI------FSDFYLSIQDFPLYLDSQASVDELWKDQSAWVKKSIINSASTYFFSSDRAMNEYAEQIWDIKPCEV 845          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PHSG_SHIFL (Glycogen phosphorylase OS=Shigella flexneri GN=glgP PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.714e-45
Identity = 95/199 (47.74%), Postives = 132/199 (66.33%), Query Frame = -2
Query:  221 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 811
            GD LKV+F+P+Y+VS+A+L+IPA++LS+ IS AG EASGTSNMKFA+NG + IGTLDGANVE+   VG +N F+FG  A E+  LR++  +    +  D    +V   + SGVF   +       ++    FG  D++ V  D+ SY++CQ+KVDE Y  Q+ WT  +++N A    FSSDRTI+EYA  IW+I PV L
Sbjct:  619 GDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLDHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRYRDLVDSLINFG--DHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDRTIKEYADHIWHIDPVRL 815          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PHSG_ECOLI (Glycogen phosphorylase OS=Escherichia coli (strain K12) GN=glgP PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.714e-45
Identity = 95/199 (47.74%), Postives = 132/199 (66.33%), Query Frame = -2
Query:  221 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 811
            GD LKV+F+P+Y+VS+A+L+IPA++LS+ IS AG EASGTSNMKFA+NG + IGTLDGANVE+   VG +N F+FG  A E+  LR++  +    +  D    +V   + SGVF   +       ++    FG  D++ V  D+ SY++CQ+KVDE Y  Q+ WT  +++N A    FSSDRTI+EYA  IW+I PV L
Sbjct:  619 GDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLDHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRYRDLVDSLINFG--DHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDRTIKEYADHIWHIDPVRL 815          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGL_RAT (Glycogen phosphorylase, liver form OS=Rattus norvegicus GN=Pygl PE=1 SV=5)

HSP 1 Score: 177.178 bits (448), Expect = 9.695e-44
Identity = 97/199 (48.74%), Postives = 130/199 (65.33%), Query Frame = -2
Query:  221 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK--SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 811
            G  LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K   +A   E+K  +      F S N  +L   +     +   D F V  D+ +Y++CQEKV + Y +QK W  M + N A S KFSSDRTI+EYA+DIWN+ P +L
Sbjct:  638 GSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRVDDVAALDKKGYEAKEYYEA-LPELKLVIDQIDNGFFSPNQPDLFKDIINMLFY--HDRFKVFADYEAYVKCQEKVSQLYMNQKAWNTMVLRNIAASGKFSSDRTIREYAKDIWNMEPSDL 833          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGL_MOUSE (Glycogen phosphorylase, liver form OS=Mus musculus GN=Pygl PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 9.695e-44
Identity = 97/199 (48.74%), Postives = 130/199 (65.33%), Query Frame = -2
Query:  221 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK--SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 811
            G  LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K   +A   E+K  +      F S N  +L   +     +   D F V  D+ +Y++CQEKV + Y +QK W  M + N A S KFSSDRTI+EYA+DIWN+ P +L
Sbjct:  638 GSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRVDDVAALDKKGYEAKEYYEA-LPELKLVIDQIDNGFFSPNQPDLFKDIINMLFY--HDRFKVFADYEAYVKCQEKVSQLYMNQKAWNTMVLKNIAASGKFSSDRTIKEYAKDIWNMEPSDL 833          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PHSG_YEAST (Glycogen phosphorylase OS=Saccharomyces cerevisiae GN=GPH1 PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 9.695e-44
Identity = 94/194 (48.45%), Postives = 128/194 (65.98%), Query Frame = -2
Query:  227 LLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQK-RWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPV 805
            LLKV+FV DYNVS AE++IPAS+LS+HISTAG EASGTSNMKF MNG ++IGT+DGANVEI +E+GE+N FLFG  +  +  LR           +  + V  +++SG F   N +E    ++  +  G  DY+LV  DF SYL   E VD+ + +Q+  W + S+++ A    FSSDR I+EY+  IWN+ PV
Sbjct:  710 LLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGNLSENVEELRYNHQYHPQDLPSSLDSVLSYIESGQFSPENPNEFKPLVDSIKYHG--DYYLVSDDFESYLATHELVDQEFHNQRSEWLKKSVLSLANVGFFSSDRCIEEYSDTIWNVEPV 901          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGL_BOVIN (Glycogen phosphorylase, liver form OS=Bos taurus GN=PYGL PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.320e-42
Identity = 94/203 (46.31%), Postives = 131/203 (64.53%), Query Frame = -2
Query:  221 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYN------YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 811
            G  LK+IF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K   +A   E+K  +     G ++      + +L+  L  +      D F V  D+ +Y++CQEKV + Y + K W  M + N A S KFSSDRTI+EYARDIWN+ P ++
Sbjct:  638 GSKLKLIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIEDVAALDKKGYEAKEYYEA-LPELKLAIDQIDKGFFSPKQPDLFKDLVNMLFYH------DRFKVFADYEAYVKCQEKVSQLYMNPKAWNIMVLKNIAASGKFSSDRTIKEYARDIWNMEPSDI 833          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGM_MOUSE (Glycogen phosphorylase, muscle form OS=Mus musculus GN=Pygm PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 6.948e-42
Identity = 93/200 (46.50%), Postives = 129/200 (64.50%), Query Frame = -2
Query:  230 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK---SGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 811
            GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L +     +   D R  E+++ ++   SG F     D   +++  L  +      D F V  D+  Y++CQ+KV E Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  638 GDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVERLDQRGYNAQEYYD-RIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYIKCQDKVSELYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGL_SHEEP (Glycogen phosphorylase, liver form OS=Ovis aries GN=PYGL PE=2 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 6.948e-42
Identity = 94/203 (46.31%), Postives = 130/203 (64.04%), Query Frame = -2
Query:  221 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYN------YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 811
            G  LK+IF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF  NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K   +A   E+K  +     G ++      + +L+  L  +      D F V  D+ +Y++CQEKV + Y + K W  M + N A S KFSSDRTI+EYARDIWN+ P ++
Sbjct:  638 GSKLKLIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMQNGALTIGTMDGANVEMAEEAGEENLFIFGMRVEDVAALDKKGYEAKEYYEA-LPELKLAIDQIDKGFFSPKQPDLFKDLVNMLFYH------DRFKVFADYEAYVKCQEKVSQLYMNPKAWNIMVLKNIAASGKFSSDRTIKEYARDIWNMEPSDI 833          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGL_HUMAN (Glycogen phosphorylase, liver form OS=Homo sapiens GN=PYGL PE=1 SV=4)

HSP 1 Score: 170.629 bits (431), Expect = 9.074e-42
Identity = 94/199 (47.24%), Postives = 128/199 (64.32%), Query Frame = -2
Query:  221 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDA--RFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 811
            G  LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++A L K+  E K   +A    + V   + +G F     D     +  N  F   D F V  D+ +Y++CQ+KV + Y + K W  M + N A S KFSSDRTI+EYA++IWN+ P +L
Sbjct:  638 GSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDII--NMLF-YHDRFKVFADYEAYVKCQDKVSQLYMNPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDL 833          
The following BLAST results are available for this feature:
BLAST of CX675019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PHS1_DICDI2.307e-4547.69Glycogen phosphorylase 1 OS=Dictyostelium discoide... [more]
PHSG_SHIFL6.714e-4547.74Glycogen phosphorylase OS=Shigella flexneri GN=glg... [more]
PHSG_ECOLI6.714e-4547.74Glycogen phosphorylase OS=Escherichia coli (strain... [more]
PYGL_RAT9.695e-4448.74Glycogen phosphorylase, liver form OS=Rattus norve... [more]
PYGL_MOUSE9.695e-4448.74Glycogen phosphorylase, liver form OS=Mus musculus... [more]
PHSG_YEAST9.695e-4448.45Glycogen phosphorylase OS=Saccharomyces cerevisiae... [more]
PYGL_BOVIN5.320e-4246.31Glycogen phosphorylase, liver form OS=Bos taurus G... [more]
PYGM_MOUSE6.948e-4246.50Glycogen phosphorylase, muscle form OS=Mus musculu... [more]
PYGL_SHEEP6.948e-4246.31Glycogen phosphorylase, liver form OS=Ovis aries G... [more]
PYGL_HUMAN9.074e-4247.24Glycogen phosphorylase, liver form OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59B08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59B08-C15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675019 ID=CX675019; Name=CX675019; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTGAAACAAGATTTTCAGTTCTTATTTATTTTATTCTATTAACTAC
GTAATACAGTAATTATATTCATCGAAGATACATTTATTCACGGCTTTCAT
CCAGGGATCATAAGCATTTTGCTTTACATAGAACATATATCAACAGGATG
CCATAAGTGATCAGAAAAGCCTGTGGTAGTCCCAACTCAAGTACTAGGAA
CAAGCATTACACAGTCACGGCAATTCGACGGGTATTATGTTCCATATGTC
TCGGGCATATTCCTGAATCGTTCTGTCGCTGCTGAACTTGGATGAACCCG
CTGTGTTCATGATCGACATTCTCGTCCATCTCTTTTGATCGCAATATGCT
TCATCAACCTTCTCTTGGCATTCCAAGTAACTAGGGAAATCTTTGCCCAC
GAGGAAATAATCTGCCTGGCCAAAACCTTCATTTCCTTCCAGTGATCCCA
TTAGTTCATCATAGTTGTAAGAACCAAAAACACCAGATTTGACAAATTTC
TTCACTTCTTCAAAACGTGCGTCGGGAACAAATTTCCCCTCAGATCTTTC
TTTTCTCAATCCTGCAATCTCGTGGGCTCTGGCACCAAATAGGAAAAAGT
TCTCCTCTCCAACCTCTTGCCGTATTTCAACATTGGCACCATCCAAGGTT
CCAATCAAAATGCAACCATTCATTGCAAATTTCATGTTACTGGTACCACT
AGCCTCCATCCCGGCAGTACTGATGTGTTGTGAGAGCTCACTTGCAGGTA
TAAGCAATTCAGCCACACTTACATTGTAATCAGGGACAAAAATAACCTTC
AATAAGTCACCT
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