CX675012

Overview
NameCX675012
Unique NameCX675012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675012_ssr386 microsatellite CX675012_ssr386:386..397. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10372 contig Csv1_Contig10372:61..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_SYNE7 (Hydroxyacylglutathione hydrolase OS=Synechococcus elongatus (strain PCC 7942) GN=gloB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.632e-44
Identity = 92/197 (46.70%), Postives = 123/197 (62.44%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYG-AKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSA------AVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQ 796
            ++I+ +P L+DNY +LL D++     VVDP+EA PV+ AL  +   LT I               L  ++  A V  S VD+DRIPG  ++L  GD+    G    V+  PGHTRGHI++YFP  A      A+F GDTLF+  CG+LFEGTP QM  SLQ++ SLPDDT +YC HEYTL+N +FAL++EP+N  LQ
Sbjct:    1 MRIDCLPALQDNYIFLLVDVEQRQAAVVDPAEAEPVLAALQAEGLTLTAILNTHHHGDHVGGNRRLLRQFPEAAVSASAVDRDRIPGQTVLLEAGDRLQICGQTAEVLFVPGHTRGHIAYYFPEVAEGNPRGALFCGDTLFAGGCGRLFEGTPAQMLDSLQQLRSLPDDTAIYCAHEYTLNNLRFALTVEPDNFDLQ 197          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_RHIL3 (Hydroxyacylglutathione hydrolase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=gloB PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.146e-43
Identity = 82/194 (42.27%), Postives = 123/194 (63.40%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAA 808
            L++++  C  DN+  L+HD +TG    +D  E  P+++A +R+   +T+I               LK ++G ++IG   +   IPG+D  + DGD ++F  H V+VI+TPGHT GHI ++F     +F  DTLF+L CG+LFE     M+ SLQK+  LPD+T VY GHEYTLSN++FAL+++P+NE L+S AA
Sbjct:    4 LELDVFLCRTDNFGVLVHDPETGFTAAIDAPEEAPILEAATRRGWKITHIFTTHHHTDHVTANLALKEQFGCEIIGPINEAVAIPGLDRAMADGDSFLFGDHTVNVIETPGHTAGHICYHFVDDKLLFAADTLFALGCGRLFERPAADMWHSLQKLAVLPDETAVYFGHEYTLSNARFALTVDPDNERLKSRAA 197          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_ROSDO (Hydroxyacylglutathione hydrolase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gloB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.660e-43
Identity = 81/191 (42.41%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQS 799
            ++I  +PCL DNYA+L+HD  TG   ++D  EA P++  L+ +   L+ +              ++ + + A+V G+  D  R+P +D+ L DG+ + FAGH+V V+D  GHT GHI++Y   + AVFT D+L +L CG+LFEGT  QM+ SL K+ +LP +T VY GHEYT +N++FAL+I+P+N  L S
Sbjct:    3 IEILTIPCLNDNYAFLVHDTATGQTALIDVPEAAPILKVLAERTWQLSEVWITHHHADHVQGLGDILSAHPAQVRGAARDAHRLPALDVELRDGESFDFAGHKVDVMDVSGHTVGHIAYYCADAKAVFTADSLMALGCGRLFEGTADQMWDSLSKLAALPSETQVYSGHEYTAANARFALTIDPHNPDLIS 193          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_RHIEC (Hydroxyacylglutathione hydrolase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=gloB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.660e-43
Identity = 82/194 (42.27%), Postives = 122/194 (62.89%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAA 808
            L++++  C  DN+  L+HD +TG    +D  E  P+++A +R+   +T+I               LK ++G ++IG   +   IPG+D  + DGD ++F  H V VI+TPGHT GHI ++F     +F  DTLF+L CG+LFE     M+ SLQK+  LPD+T VY GHEYTLSN++FAL+++P+NE L+S AA
Sbjct:    4 LELDVFLCRTDNFGVLVHDPETGFTAAIDAPEEAPILEAATRRGWKITHIFTTHHHTDHVAANLALKEQFGCEIIGPINEAIAIPGLDRTMADGDSFLFGDHTVKVIETPGHTAGHICYHFVDDKLLFAADTLFALGCGRLFERPAADMWHSLQKLAVLPDETAVYFGHEYTLSNARFALTVDPDNERLKSRAA 197          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_RHORT (Hydroxyacylglutathione hydrolase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=gloB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.154e-43
Identity = 89/195 (45.64%), Postives = 120/195 (61.54%), Query Frame = 2
Query:  221 SSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYA 805
            S+L I  +  L DNY YL+    TG   V+DPS A PV+ A       +T+I              E+KA  G ++IG   D  R+PGID  + +GD+      E  VI+TPGHT GHI+++F  S+A+F GDTLFS  CG+LFEG+ GQM+ SL+K+ +LP  T V+CGHEYT  N  FAL+I+P NEAL++ A
Sbjct:    2 STLDIHQIAVLSDNYIYLVRCRATGACAVIDPSLAEPVLAAAESLGWTITHILNTHHHYDHTGGNEEIKAATGCEIIGFAGDAHRLPGIDRTVVEGDRVAIGQAEARVIETPGHTLGHIAYWFAESSALFCGDTLFSAGCGRLFEGSAGQMWDSLRKLRALPAQTLVFCGHEYTQPNITFALTIDPRNEALRARA 196          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_RHOP5 (Hydroxyacylglutathione hydrolase OS=Rhodopseudomonas palustris (strain BisA53) GN=gloB PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.099e-42
Identity = 87/193 (45.08%), Postives = 114/193 (59.07%), Query Frame = 2
Query:  230 QIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAA 808
            +I L  CL DN+ YL+HD  TG    VD  EA P+I AL+R+   LT I              ELK +Y  +V+       RIP +D+ +  GD     G    V++TPGHT  H+++ F    AVF GDTLFS+ CG++FEGT   M+ SL K+  LPDD  +YCGHEYT +N KFAL +EP+N ALQ+ AA
Sbjct:    4 EIRLFTCLNDNFGYLIHDPATGATASVDAPEAAPIIAALAREGWTLTDILVTHHHGDHVGGVAELKQKYRCRVVAPHDRNGRIPEVDLRVAQGDVVKVGGLLARVLETPGHTLDHLAYVFDDDKAVFAGDTLFSIGCGRVFEGTYPMMWDSLLKLRVLPDDMRLYCGHEYTAANVKFALGVEPDNPALQARAA 196          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_RHOP2 (Hydroxyacylglutathione hydrolase OS=Rhodopseudomonas palustris (strain HaA2) GN=gloB PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.047e-42
Identity = 86/191 (45.03%), Postives = 114/191 (59.69%), Query Frame = 2
Query:  233 IELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYA 805
            I +VPCL DN+ YL+HD  +G    +D  EA P+I AL ++   LT I              ELKA+Y  +V+       +I   D+ + +GD     G E  V++TPGHT  HIS+ F    A+F  DTLFS+ CG++FEGT   M+ SL K+ +LPDD  +YCGHEYT SN KFAL+IEP N ALQ+ A
Sbjct:    5 IRIVPCLTDNFGYLIHDPSSGATASIDAPEAAPLIAALEKEGWKLTDILVTHHHGDHVGGIAELKAKYHCRVVAPHDANAKIADADLRVEEGDVVKVGGLEARVLETPGHTLDHISYVFADDRALFAADTLFSIGCGRVFEGTYPMMWESLLKLRALPDDYKLYCGHEYTASNVKFALTIEPENAALQARA 195          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_SYNY3 (Hydroxyacylglutathione hydrolase OS=Synechocystis sp. (strain PCC 6803) GN=gloB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.285e-42
Identity = 90/196 (45.92%), Postives = 116/196 (59.18%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARY-GAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYF-PGSAA----VFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQ 796
            + I  +P L DNY +LLHD       VVDP+EA PV+D L     +L  I              EL A+Y   +V G   D+ RIPG  + L DGD+  FA  E  V   PGHTRGHI++YF PGS      +F GDT+F+  CG+LFEGTP QM  S+ K+  LPD T ++C HEYTL N KFAL+++P+N+ LQ
Sbjct:    1 MDIHRLPALADNYIFLLHDRQRNQAAVVDPAEAKPVLDCLETLGADLVTIYNTHHHGDHVGANRELLAKYPNLEVYGGVEDQGRIPGQTVFLRDGDRLSFADREATVYFVPGHTRGHIAYYFAPGSGETIGDLFCGDTIFAGGCGRLFEGTPAQMVQSIGKLRQLPDQTRLWCAHEYTLGNLKFALTVDPSNKDLQ 196          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_SYNJB (Hydroxyacylglutathione hydrolase OS=Synechococcus sp. GN=gloB PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.903e-42
Identity = 88/192 (45.83%), Postives = 119/192 (61.98%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYG-AKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQS 799
            +++  +P LRDNY YLLH+ DT T  VVDP+ A PV++ L+     L  I              +L  RY  A+V GS VD+ RIPG  + L  G+   FAG    V+  PGHTRGHI++YF  S  +F GDTLF+  CG+LFEGTP QM  SL ++  LP+ T V+C HEYTL+N +FAL+++ +N  LQ+
Sbjct:    1 MRVLQLPALRDNYIYLLHNPDTATAAVVDPAVAEPVLEKLAELGAELVAIFNTHHHHDHVGGNRQLLERYPRARVYGSQVDRGRIPGQTVELKAGETVEFAGRLAKVLFVPGHTRGHIAYYFSESGDLFCGDTLFAGGCGRLFEGTPEQMVGSLDQLRQLPEATRVWCAHEYTLNNLRFALTVDGDNPDLQA 192          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_RHOS5 (Hydroxyacylglutathione hydrolase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=gloB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.177e-41
Identity = 82/189 (43.39%), Postives = 117/189 (61.90%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEAL 793
            L++  VPCL DNYA+L+HD  +G   VVD  EA PV+ AL+ +N  LT I               L+   GA+V G+  D  R+P +D+ L +GD+      +  V++ PGHT GHI+F+F  S   FTGD+L ++ CG+LFEGTP  M+ SL+K+ +LP DT +  GHEYT +N++FA ++EP N  L
Sbjct:    3 LELVTVPCLSDNYAFLVHDAASGETAVVDVPEAGPVMAALAERNWRLTQILLTHHHGDHVAGVAALREATGARVAGAAADAHRLPPLDLALAEGDRVRIGSEDGTVLEVPGHTVGHIAFHFADSGLAFTGDSLMAMGCGRLFEGTPRMMWQSLRKLSALPADTLICSGHEYTQANARFACTLEPENPVL 191          
The following BLAST results are available for this feature:
BLAST of CX675012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
GLO2_SYNE79.632e-4446.70Hydroxyacylglutathione hydrolase OS=Synechococcus ... [more]
GLO2_RHIL32.146e-4342.27Hydroxyacylglutathione hydrolase OS=Rhizobium legu... [more]
GLO2_ROSDO3.660e-4342.41Hydroxyacylglutathione hydrolase OS=Roseobacter de... [more]
GLO2_RHIEC3.660e-4342.27Hydroxyacylglutathione hydrolase OS=Rhizobium etli... [more]
GLO2_RHORT8.154e-4345.64Hydroxyacylglutathione hydrolase OS=Rhodospirillum... [more]
GLO2_RHOP53.099e-4245.08Hydroxyacylglutathione hydrolase OS=Rhodopseudomon... [more]
GLO2_RHOP24.047e-4245.03Hydroxyacylglutathione hydrolase OS=Rhodopseudomon... [more]
GLO2_SYNY35.285e-4245.92Hydroxyacylglutathione hydrolase OS=Synechocystis ... [more]
GLO2_SYNJB6.903e-4245.83Hydroxyacylglutathione hydrolase OS=Synechococcus ... [more]
GLO2_RHOS51.177e-4143.39Hydroxyacylglutathione hydrolase OS=Rhodobacter sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59B01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59B01-C1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675012 ID=CX675012; Name=CX675012; organism=Citrus sinensis; type=EST; length=808bp
GATGCAAATGATCTCCAGAGCATCATCTGCTGCCATGGCCTCCTTCACTT
GTTCAAGGGGGCAGAGTGGCCTTTGTGTTGTGCCAGGACCAAGACAACTT
TGCCTTAGAAAGGGTCTTCTGTATGGTTTCATGCGCTTATTATCAATGCC
ATTCAAGACATTGCATTTAGCAAGTCGATCTCTTAGAGTTGCTGAGTTTT
GCAGTATCTCCAACATGTCATCATCGTTGCAAATTGAGTTGGTACCGTGT
CTCAGGGACAACTATGCATATCTTTTACATGACATGGACACAGGTACTGT
TGGAGTTGTTGATCCTTCTGAAGCTGTTCCTGTGATAGATGCTTTGAGTA
GGAAAAACCGAAATCTGACTTACATTCTAAATACACATCATCATCATGAT
CACACCGGTGGTAATTTGGAGCTAAAAGCAAGGTACGGTGCAAAGGTGAT
TGGTTCAGGAGTAGACAAGGATAGGATCCCTGGCATTGATATAGTTTTGA
ATGATGGAGACAAATGGATGTTTGCTGGTCATGAGGTGCATGTGATTGAT
ACGCCTGGCCATACCCGAGGTCATATTAGCTTCTACTTTCCTGGATCAGC
GGCAGTTTTTACTGGGGACACCTTGTTCAGCTTATCCTGTGGCAAGCTTT
TTGAAGGAACCCCTGGGCAGATGTTTTCTTCCCTTCAGAAGATAATGTCT
CTGCCAGATGATACAAATGTATATTGTGGTCATGAATATACGCTGAGTAA
TTCAAAATTTGCATTGTCCATAGAACCCAACAATGAGGCCCTTCAATCAT
ATGCAGCG
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