CX675012

Overview
NameCX675012
Unique NameCX675012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675012_ssr386 microsatellite CX675012_ssr386:386..397. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10372 contig Csv1_Contig10372:61..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_RHILO (Hydroxyacylglutathione hydrolase OS=Rhizobium loti GN=gloB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.461e-40
Identity = 76/194 (39.18%), Postives = 113/194 (58.25%), Query Frame = 2
Query:  224 SLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYA 805
            +++IE   C  DN+  L+HD  +G   ++D  E  P++ A+ R     T I               LK R+  +++G   +K +IPGID  + +G         + VI TPGHT GH+S++ P S   FT DTLF+L CG+LFE  P  M+ SL+K+ +LP  T +YCGHEYTL+N++FAL+++P N AL+  A
Sbjct:    2 AVEIEQFMCRSDNFGVLVHDPKSGQTAIIDAPEEAPILAAIKRTGWTPTMILTTHHHMDHVEANLALKERFKLRIVGPEAEKAKIPGIDETVEEGSVLHLGDERIEVIATPGHTAGHVSYHLPASKVAFTADTLFALGCGRLFECKPPVMYESLRKLAALPAATTIYCGHEYTLANARFALTVDPTNSALKERA 195          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_RHOPA (Hydroxyacylglutathione hydrolase OS=Rhodopseudomonas palustris GN=gloB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.102e-39
Identity = 84/191 (43.98%), Postives = 110/191 (57.59%), Query Frame = 2
Query:  233 IELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYA 805
            I +VPCL DN+ YL+HD  TG    +D  EA P+I AL ++   LT I              ELK +Y  +V        +I   D+ L +GD          V++TPGHT  H+S+ F    A+F  DTLFS+ CG++FEGT   M+ SL K+ +LPDD  +YCGHEYT SN KFAL IEP+N ALQ+ A
Sbjct:    5 IRIVPCLTDNFGYLVHDPATGATASIDAPEAAPLIAALDKEGWKLTDILVTHHHGDHVGGIAELKKKYQCRVHAPHDANAKIADADVRLQEGDVVRVGDLTARVLETPGHTLDHLSYVFDDDRALFAADTLFSIGCGRVFEGTYPMMWESLLKLRALPDDFKLYCGHEYTASNVKFALGIEPDNAALQARA 195          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_MICAN (Hydroxyacylglutathione hydrolase OS=Microcystis aeruginosa (strain NIES-843) GN=gloB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.188e-39
Identity = 90/196 (45.92%), Postives = 112/196 (57.14%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAK-VIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP-----GSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQ 796
            ++IE +  L DNY +LL+D       VVDP+E  PV   L     +L  I               L  RY    V G   D+ RIPG  + L +GD+  FAG    V   PGHTR HI++YFP         +F GDTLFS  CG+LFEGTPGQM +SL K+ SLPD T V+C HEYTL+N KFAL+++PNN ALQ
Sbjct:    1 MEIERLNALSDNYIFLLYDPAQKIAAVVDPAEPEPVFRRLEALQVDLVAIFNTHHHGDHVGANQALINRYPHLCVYGGKEDRGRIPGQQLFLEEGDRVEFAGRWAEVFFVPGHTRAHIAYYFPPVNPGDYGELFCGDTLFSGGCGRLFEGTPGQMVASLTKLRSLPDQTRVWCAHEYTLNNLKFALTVDPNNAALQ 196          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_BART1 (Hydroxyacylglutathione hydrolase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=gloB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.188e-39
Identity = 80/191 (41.88%), Postives = 113/191 (59.16%), Query Frame = 2
Query:  233 IELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYA 805
            IE   C +DN+  L+HD  +G    +D  E+  + +AL R+N  L  I              ELK  Y A V G   +K++I  +D  L   +K +F    +  + TPGHT G +S+YFP    +F GDTLFSL CG+LFEGT  QM +SL+K+  LPD+T +YCGHEYT +N+ FAL+++P+N+ LQ  A
Sbjct:    3 IEQFICRKDNFGVLIHDEKSGMTAAIDAPESKAIHNALKRRNWTLHTIFVTHHHHDHVEALAELKQVYNAIVFGPAAEKNKIYHLDQTLQSDEKLLFGSQSLLALSTPGHTLGALSYYFPEKKLLFAGDTLFSLGCGRLFEGTAVQMLNSLKKLCKLPDETLLYCGHEYTKNNALFALTLDPHNQKLQQRA 193          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_CYAP8 (Hydroxyacylglutathione hydrolase OS=Cyanothece sp. (strain PCC 8801) GN=gloB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.143e-39
Identity = 81/197 (41.12%), Postives = 118/197 (59.90%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARY-GAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAA-----VFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQS 799
            ++I+ +P L DNY +LL+D DT T  VVDP+E  PV++ L++    L  I              +L+  +    + G   D+ RIPG  + L +GD+  F      V+  PGHTR HI++YFP   +     +F GDTLF   CG+LFEGTP QM +SL K+ +LPD+T V+C HEYTL N +FAL+++P+N  L++
Sbjct:    1 MEIKRLPALSDNYIFLLYDADTQTAAVVDPAEPTPVLECLNKLGAQLVAIFNTHHHYDHVGANNQLQQYFPNLCIYGGSEDRGRIPGQQVFLKEGDRVEFGQRVGEVLFVPGHTRAHIAYYFPPKLSQETGELFCGDTLFGGGCGRLFEGTPTQMVNSLTKLRNLPDNTRVWCAHEYTLKNLQFALTVDPDNLVLKN 197          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_ANAVT (Hydroxyacylglutathione hydrolase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gloB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.143e-39
Identity = 86/196 (43.88%), Postives = 110/196 (56.12%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGA-KVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAA-----VFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQ 796
            +Q+  +  L DNY +LLHD       VVDP+EA PV+  L++ N  L  I              +L   +   KV G   DK RIPG  + L  GD+  F      VI  PGHTR HI++YFP   A     +F GDTLF+  CG+LFEGTP QM  SL K+ SLP++T V+C HEYTL N +FALS++  N  LQ
Sbjct:    1 MQVIRLAALSDNYIFLLHDSQKNIAAVVDPAEAEPVLKQLAQLNAELVAIFNTHHHNDHVGGNQQLIQNFPQLKVYGGAEDKGRIPGQQVFLQPGDRVQFTDRVAEVIFVPGHTRAHIAYYFPPQTADTPGELFCGDTLFAGGCGRLFEGTPAQMVESLTKLRSLPENTRVWCAHEYTLKNLQFALSVDSENTELQ 196          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_RHOCA (Hydroxyacylglutathione hydrolase OS=Rhodobacter capsulatus GN=gloB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.218e-38
Identity = 82/190 (43.16%), Postives = 110/190 (57.89%), Query Frame = 2
Query:  224 SLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEAL 793
            +L++  +PCL DNYA+L HD  T TV VVD  EA PV+  L+ +   L +I               L    GAKV G+  D  R+P +D  +  GD          VI   GHT GHI++Y PG+  +F+GD+L S  CG+LFEGTP QMF +L ++ +LP +T V  GHEYT +N +FALS+EP N  L
Sbjct:    2 TLELTPIPCLTDNYAWLWHDTATDTVVVVDVPEAAPVLKVLTDRRWQLHHILITHHHADHIAGVEALAQATGAKVAGAAADAHRLPPLDHPVAPGDVLHLGMEAAQVIAADGHTLGHIAWYLPGAGLLFSGDSLMSWGCGRLFEGTPAQMFDTLTRLAALPPETRVCSGHEYTAANGRFALSLEPGNGRL 191          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_SYNP2 (Hydroxyacylglutathione hydrolase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gloB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.078e-38
Identity = 85/198 (42.93%), Postives = 119/198 (60.10%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARY-GAKVIGSGVD--KDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP-----GSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQ 796
            ++I  +P   DNY +LL D  TG   VVDP +A  V++ LS+++  L  I              +L + +  A V GS +D  K RIPG  + L  G+        V ++  PGHT+GHI++YFP      S  +F GDTLF+  CG+L EGTP Q+F+SLQ+I  LPD+TN++C HEYTL N KF+L+++P NEALQ
Sbjct:    1 MEIIRLPAFNDNYIFLLVDRATGDCAVVDPGDAKVVLEYLSKEDLTLKTILITHHHADHVGGNRQLLSHFPAAAVYGSEIDLQKRRIPGQTVSLKAGNHLDLFNRTVEILFVPGHTQGHIAYYFPPLQPEDSGDLFCGDTLFANGCGRLLEGTPAQLFASLQQICDLPDNTNIWCAHEYTLKNIKFSLTVDPENEALQ 198          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_CYAP4 (Hydroxyacylglutathione hydrolase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=gloB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.545e-38
Identity = 85/199 (42.71%), Postives = 113/199 (56.78%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVI-GSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP----GSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAA 808
            +QI+ +P L DNY +L+ D +     VVDP+ A PV++ L      L  I              EL   +   V+ G   D+ RIPG  + L  GD+  FA     V+  PGHTR HI++YFP     S  +F GDTLF+  CG+LFEGTP QM +SL ++  LPD+T V+C HEYTL N +FAL+IEP N  LQ+  A
Sbjct:    1 MQIDRLPVLSDNYIFLVLDPERRQAAVVDPAVAAPVLERLRSLQFQLVAIFNTHHHHDHVGGNQELLQHFPTAVVYGGAEDRGRIPGQQVFLQPGDRVNFAQRTAEVLFVPGHTRAHIAYYFPPVNHSSGELFCGDTLFAGGCGRLFEGTPAQMVNSLNQLRQLPDNTRVWCAHEYTLKNLQFALTIEPENVELQTRLA 199          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_CYAA5 (Hydroxyacylglutathione hydrolase OS=Cyanothece sp. (strain ATCC 51142) GN=gloB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.630e-38
Identity = 82/196 (41.84%), Postives = 116/196 (59.18%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARY-GAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGS-----AAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQ 796
            ++I+ +P L DNY +LLHD +  T  VVDP+ A PV++ L +    L  I              +L  ++    V GS  D+ RIPG  + L +GD   FAG    V   PGHTRGHI++YFP +       +F GDT+F+  CG+LFEGTP QM  S+ K+ +LPD T ++C HEYTL+N KFA++++ +N  LQ
Sbjct:    1 MEIKRLPALSDNYIFLLHDANNNTAAVVDPAVAEPVLNCLDQLGAKLIAIFNTHHHADHVGGNKKLMEQFPDLCVYGSKEDQGRIPGQQVFLEEGDTVEFAGKTGKVYFVPGHTRGHIAYYFPPNENEEIGDLFCGDTIFAGGCGRLFEGTPAQMVESIGKLRNLPDHTRIWCAHEYTLNNLKFAVTVDKDNSDLQ 196          
The following BLAST results are available for this feature:
BLAST of CX675012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
GLO2_RHILO6.461e-4039.18Hydroxyacylglutathione hydrolase OS=Rhizobium loti... [more]
GLO2_RHOPA1.102e-3943.98Hydroxyacylglutathione hydrolase OS=Rhodopseudomon... [more]
GLO2_MICAN4.188e-3945.92Hydroxyacylglutathione hydrolase OS=Microcystis ae... [more]
GLO2_BART14.188e-3941.88Hydroxyacylglutathione hydrolase OS=Bartonella tri... [more]
GLO2_CYAP87.143e-3941.12Hydroxyacylglutathione hydrolase OS=Cyanothece sp.... [more]
GLO2_ANAVT7.143e-3943.88Hydroxyacylglutathione hydrolase OS=Anabaena varia... [more]
GLO2_RHOCA1.218e-3843.16Hydroxyacylglutathione hydrolase OS=Rhodobacter ca... [more]
GLO2_SYNP22.078e-3842.93Hydroxyacylglutathione hydrolase OS=Synechococcus ... [more]
GLO2_CYAP43.545e-3842.71Hydroxyacylglutathione hydrolase OS=Cyanothece sp.... [more]
GLO2_CYAA54.630e-3841.84Hydroxyacylglutathione hydrolase OS=Cyanothece sp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59B01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59B01-C1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675012 ID=CX675012; Name=CX675012; organism=Citrus sinensis; type=EST; length=808bp
GATGCAAATGATCTCCAGAGCATCATCTGCTGCCATGGCCTCCTTCACTT
GTTCAAGGGGGCAGAGTGGCCTTTGTGTTGTGCCAGGACCAAGACAACTT
TGCCTTAGAAAGGGTCTTCTGTATGGTTTCATGCGCTTATTATCAATGCC
ATTCAAGACATTGCATTTAGCAAGTCGATCTCTTAGAGTTGCTGAGTTTT
GCAGTATCTCCAACATGTCATCATCGTTGCAAATTGAGTTGGTACCGTGT
CTCAGGGACAACTATGCATATCTTTTACATGACATGGACACAGGTACTGT
TGGAGTTGTTGATCCTTCTGAAGCTGTTCCTGTGATAGATGCTTTGAGTA
GGAAAAACCGAAATCTGACTTACATTCTAAATACACATCATCATCATGAT
CACACCGGTGGTAATTTGGAGCTAAAAGCAAGGTACGGTGCAAAGGTGAT
TGGTTCAGGAGTAGACAAGGATAGGATCCCTGGCATTGATATAGTTTTGA
ATGATGGAGACAAATGGATGTTTGCTGGTCATGAGGTGCATGTGATTGAT
ACGCCTGGCCATACCCGAGGTCATATTAGCTTCTACTTTCCTGGATCAGC
GGCAGTTTTTACTGGGGACACCTTGTTCAGCTTATCCTGTGGCAAGCTTT
TTGAAGGAACCCCTGGGCAGATGTTTTCTTCCCTTCAGAAGATAATGTCT
CTGCCAGATGATACAAATGTATATTGTGGTCATGAATATACGCTGAGTAA
TTCAAAATTTGCATTGTCCATAGAACCCAACAATGAGGCCCTTCAATCAT
ATGCAGCG
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