CX675012

Overview
NameCX675012
Unique NameCX675012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675012_ssr386 microsatellite CX675012_ssr386:386..397. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10372 contig Csv1_Contig10372:61..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_ECO45 (Hydroxyacylglutathione hydrolase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=gloB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.298e-34
Identity = 78/192 (40.62%), Postives = 112/192 (58.33%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSY 802
            + +  +P   DNY ++L+D + G   +VDP +A PV++A+S  N     I              EL  ++  +++  G  + +  G   V+ DG+     GHE  VI TPGHT GHI ++      +F GDTLFS  CG+LFEGTP QM+ S++K+ +LPDDT V C HEYTLSN KFALSI P++ ++  Y
Sbjct:    1 MNLNSIPAFDDNYIWVLND-EAGRCLIVDPGDAEPVLNAISANNWQPEAIFLTHHHHDHVGGVKELVEKF-PQIVVYGPQETQDKGTTQVVKDGETAFVLGHEFSVIATPGHTLGHICYF--SKPYLFCGDTLFSGGCGRLFEGTPSQMYQSIKKLSALPDDTLVCCAHEYTLSNMKFALSILPHDLSINDY 188          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_ESCF3 (Hydroxyacylglutathione hydrolase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gloB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.919e-34
Identity = 78/192 (40.62%), Postives = 112/192 (58.33%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSY 802
            + +  +P   DNY ++L+D + G   +VDP +A PV++A++  N     I              EL  ++  +++  G  + +  G   V+ DG+     GHE  VI TPGHT GHI ++      +F GDTLFS  CG+LFEGTP QM+ SL+K+ +LPDDT V C HEYTLSN KFALSI P++ ++  Y
Sbjct:    1 MNLNSIPAFDDNYIWVLND-EAGRCLIVDPGDAEPVLNAIAANNWQPEAIFLTHHHHDHVGGVKELVKKF-PQIVVYGPQETQDKGTTQVVKDGETAFVLGHEFSVIATPGHTLGHICYF--SKPYLFCGDTLFSGGCGRLFEGTPSQMYQSLKKLSALPDDTLVCCAHEYTLSNMKFALSILPHDLSINDY 188          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_SHEB8 (Hydroxyacylglutathione hydrolase OS=Shewanella baltica (strain OS185) GN=gloB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.036e-34
Identity = 84/196 (42.86%), Postives = 107/196 (54.59%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFA----GHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSY 802
            L I  +    DNY ++L       V VVDP +A  VID L      L  I              EL+A    ++   G D ++I GI   L+   +  F       E+ V+D PGHT GHI++    + A+F GDTLFS  CG+LFEGTP QM +SLQ++  LP DT VYC HEYTLSN KFAL++ PNN ALQ Y
Sbjct:    2 LTITAIKAFNDNYIWVLQQQPHTQVYVVDPGDASVVIDYLEANKLTLAGILLTHHHNDHTGGVAELQAYSQNRLSVYGPDNEKIEGITHPLHATAQPRFILDYMSGELQVLDVPGHTAGHIAYVI--ADALFCGDTLFSGGCGRLFEGTPAQMLNSLQQLAQLPADTRVYCAHEYTLSNLKFALAVNPNNRALQDY 195          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_PSEPG (Hydroxyacylglutathione hydrolase OS=Pseudomonas putida (strain GB-1) GN=gloB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.036e-34
Identity = 80/193 (41.45%), Postives = 110/193 (56.99%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNR-NLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPG--SAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQ 796
            +QI+ +P   DNY +LL D       VVDP +A PV   L+      L+ I               LK   GA+V G     +RIPG D+ L++GDK    G    V+  PGHT GHI+F+  G  +  +F+GDTLF+  CG++FEGTP QM  +L ++ +LP+ T VYC HEYTLSN +FA ++EP N  +Q
Sbjct:    2 IQIDALPAFSDNYIWLLQDTAKRRCAVVDPGDAAPVERWLAANPEWVLSDILVTHHHNDHVGGVERLKQLSGARVCGPA--NERIPGRDLALDEGDKVDVLGVTFQVLAVPGHTLGHIAFFSDGPPTPVLFSGDTLFAAGCGRMFEGTPEQMQPALARLAALPEQTEVYCAHEYTLSNLRFAKAVEPTNTHVQ 192          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_SHEB2 (Hydroxyacylglutathione hydrolase OS=Shewanella baltica (strain OS223) GN=gloB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.180e-33
Identity = 83/196 (42.35%), Postives = 106/196 (54.08%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWM----FAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSY 802
            L I  +    DNY ++L       V VVDP +A  VID L      L  I              EL+A    ++   G D ++I GI   LN   +      +   E+ V+D PGHT GHI++    + A+F GDTLFS  CG+LFEGTP QM +SLQ++  LP DT VYC HEYT SN KFAL++ PNN ALQ Y
Sbjct:    2 LTITAIKAFNDNYIWVLQQQPHTQVYVVDPGDASVVIDYLEANQLTLAGILLTHHHNDHTGGVAELQAYSQDRLTVYGPDNEKIEGITHPLNATAQPRLTLDYMSGELQVLDVPGHTAGHIAYVI--ADALFCGDTLFSGGCGRLFEGTPAQMLNSLQQLAQLPADTRVYCAHEYTFSNLKFALAVNPNNRALQDY 195          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_ECOLU (Hydroxyacylglutathione hydrolase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=gloB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.180e-33
Identity = 78/192 (40.62%), Postives = 112/192 (58.33%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSY 802
            + +  +P   DNY ++L+D + G   +VDP +A PV++A++  N     I              EL  ++  +++  G  + +  G   V+ DG+     GHE  VI TPGHT GHI ++      +F GDTLFS  CG+LFEGTP QM+ SL+K+ +LPDDT V C HEYTLSN KFALSI P++ ++  Y
Sbjct:    1 MNLNSIPAFDDNYIWVLND-EAGRCLIVDPGDAEPVLNAIAANNWQPEAIFLTHHHHDHVGGVKELVKKF-PQIVVYGPQETQDKGTTRVVKDGEIAFVLGHEFSVIATPGHTLGHICYF--SKPYLFCGDTLFSGGCGRLFEGTPSQMYQSLKKLSALPDDTLVCCAHEYTLSNMKFALSILPHDLSINDY 188          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_ENTS8 (Hydroxyacylglutathione hydrolase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=gloB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.541e-33
Identity = 80/193 (41.45%), Postives = 108/193 (55.96%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFY-FPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSY 802
            + +  +P   DNY ++L+D D G   +VDP EA PV  AL         I               L AR+   +   G ++ R  G  +V+NDG+K+   G E     TPGHT GH S++ FP    +F GDT+FS  CG+LFEGTP QM+ S QKI +LP+DT + C HEYTLSN KF ++I P++ AL  Y
Sbjct:    1 MNLNSIPAFEDNYIWVLND-DEGKCLLVDPGEAEPVFRALEENQWQPVAILLTHHHHDHTGGVKALVARF-PDITVYGPEETRSKGAQVVVNDGEKFNILGCEFLAFSTPGHTLGHFSYFSFP---YLFCGDTMFSAGCGRLFEGTPAQMYQSFQKINALPEDTLICCAHEYTLSNLKFLVAILPDDPALTQY 188          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_ALISL (Hydroxyacylglutathione hydrolase OS=Aliivibrio salmonicida (strain LFI1238) GN=gloB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.013e-33
Identity = 80/192 (41.67%), Postives = 107/192 (55.73%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSY 802
            L I+ +P   DNY +L+H+ D   V VVDP EA PV+  L      L  I              EL  ++   +   G + + IP +   + DGD       +  V+   GHT+GHI++   G   +F GDTLFS  CG+LFEGT  QMF SLQK+ +LPD+T VYC HEYT SN  FAL++EP+N+ LQ Y
Sbjct:    2 LLIKSIPAFNDNYIWLIHNNDNHCV-VVDPGEAAPVLACLKEHGLILDAILITHHHHDHIGGVPELVRQF-PNINVVGPENEPIPTLTHPVGDGDFVELFNEKFMVLGVEGHTKGHIAYI--GDEKLFCGDTLFSAGCGRLFEGTAEQMFHSLQKLAALPDETEVYCAHEYTASNLAFALAVEPDNDYLQQY 189          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_PSEE4 (Hydroxyacylglutathione hydrolase OS=Pseudomonas entomophila (strain L48) GN=gloB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.629e-33
Identity = 81/193 (41.97%), Postives = 108/193 (55.96%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRK-NRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAA--VFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQ 796
            +QI+ +P   DNY +LL D       VVDP +  PV+  L +     L  I               LK   GA+V G     +RIP  DI L DG +    G    V+  PGHT GHI++Y   S    +F+GDTLF+  CG+LFEGTP QM  SLQ++ +LP+ T VYC HEYTLSN +FA ++EP++E +Q
Sbjct:    2 IQIDALPAFSDNYIWLLQDTANRRCAVVDPGDDAPVLAWLGKHPGWVLEAILVTHHHHDHVGGVEALKHATGAQVFGPA--NERIPARDIALEDGAQVHVLGLAFDVLAMPGHTLGHIAYYTAQSPTPLLFSGDTLFAAGCGRLFEGTPEQMHHSLQRLAALPEQTQVYCAHEYTLSNLRFARAVEPHSEPVQ 192          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_PSEPF (Hydroxyacylglutathione hydrolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=gloB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.434e-33
Identity = 82/187 (43.85%), Postives = 102/187 (54.55%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDAL-SRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNN 784
            +QI  +P   DNY +LL D  T    VVDP +A PV   L +     L  I               LK   GA V G     + IPG D+ L D D     G +  V   PGHT GHI++Y  G   +F GDTLF+  CG+LFEGTP QM  SL ++ +LP+DT VYC HEYTLSN KFA ++EP+N
Sbjct:    2 IQISALPAFTDNYIWLLQDHATQRCAVVDPGDAAPVQAWLDAHPGWVLGDILITHHHHDHVGGVETLKKATGATVYGPA--SENIPGRDVALKDNDTVRVLGWDFDVYAVPGHTLGHIAYYHHG--LLFCGDTLFAAGCGRLFEGTPQQMHQSLSRLAALPEDTLVYCTHEYTLSNLKFAAAVEPDN 184          
The following BLAST results are available for this feature:
BLAST of CX675012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
GLO2_ECO455.298e-3440.63Hydroxyacylglutathione hydrolase OS=Escherichia co... [more]
GLO2_ESCF36.919e-3440.63Hydroxyacylglutathione hydrolase OS=Escherichia fe... [more]
GLO2_SHEB89.036e-3442.86Hydroxyacylglutathione hydrolase OS=Shewanella bal... [more]
GLO2_PSEPG9.036e-3441.45Hydroxyacylglutathione hydrolase OS=Pseudomonas pu... [more]
GLO2_SHEB21.180e-3342.35Hydroxyacylglutathione hydrolase OS=Shewanella bal... [more]
GLO2_ECOLU1.180e-3340.63Hydroxyacylglutathione hydrolase OS=Escherichia co... [more]
GLO2_ENTS81.541e-3341.45Hydroxyacylglutathione hydrolase OS=Enterobacter s... [more]
GLO2_ALISL2.013e-3341.67Hydroxyacylglutathione hydrolase OS=Aliivibrio sal... [more]
GLO2_PSEE42.629e-3341.97Hydroxyacylglutathione hydrolase OS=Pseudomonas en... [more]
GLO2_PSEPF3.434e-3343.85Hydroxyacylglutathione hydrolase OS=Pseudomonas fl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59B01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59B01-C1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675012 ID=CX675012; Name=CX675012; organism=Citrus sinensis; type=EST; length=808bp
GATGCAAATGATCTCCAGAGCATCATCTGCTGCCATGGCCTCCTTCACTT
GTTCAAGGGGGCAGAGTGGCCTTTGTGTTGTGCCAGGACCAAGACAACTT
TGCCTTAGAAAGGGTCTTCTGTATGGTTTCATGCGCTTATTATCAATGCC
ATTCAAGACATTGCATTTAGCAAGTCGATCTCTTAGAGTTGCTGAGTTTT
GCAGTATCTCCAACATGTCATCATCGTTGCAAATTGAGTTGGTACCGTGT
CTCAGGGACAACTATGCATATCTTTTACATGACATGGACACAGGTACTGT
TGGAGTTGTTGATCCTTCTGAAGCTGTTCCTGTGATAGATGCTTTGAGTA
GGAAAAACCGAAATCTGACTTACATTCTAAATACACATCATCATCATGAT
CACACCGGTGGTAATTTGGAGCTAAAAGCAAGGTACGGTGCAAAGGTGAT
TGGTTCAGGAGTAGACAAGGATAGGATCCCTGGCATTGATATAGTTTTGA
ATGATGGAGACAAATGGATGTTTGCTGGTCATGAGGTGCATGTGATTGAT
ACGCCTGGCCATACCCGAGGTCATATTAGCTTCTACTTTCCTGGATCAGC
GGCAGTTTTTACTGGGGACACCTTGTTCAGCTTATCCTGTGGCAAGCTTT
TTGAAGGAACCCCTGGGCAGATGTTTTCTTCCCTTCAGAAGATAATGTCT
CTGCCAGATGATACAAATGTATATTGTGGTCATGAATATACGCTGAGTAA
TTCAAAATTTGCATTGTCCATAGAACCCAACAATGAGGCCCTTCAATCAT
ATGCAGCG
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