CX674999

Overview
NameCX674999
Unique NameCX674999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.004e-15
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = -2
Query:   14 RYEAINGEVEKLLRAGFIREVNYPEWISNVVLVKKANGKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSK 466
            + +A+N E+ + L++G IRE         V+ V K  G  RM VD+  LNK    + +PLP I+QL+    G  + + +D  S Y+ I + + DE   AF   +G+F Y VMP+G+  A A +Q  +N +   +    +  Y+D+++  SK
Sbjct:  424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSK 573          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.004e-15
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = -2
Query:   14 RYEAINGEVEKLLRAGFIREVNYPEWISNVVLVKKANGKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSK 466
            + +A+N E+ + L++G IRE         V+ V K  G  RM VD+  LNK    + +PLP I+QL+    G  + + +D  S Y+ I + + DE   AF   +G+F Y VMP+G+  A A +Q  +N +   +    +  Y+D+++  SK
Sbjct:  424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSK 573          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: POL_CAMVE (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) GN=ORF V PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.696e-14
Identity = 75/272 (27.57%), Postives = 133/272 (48.90%), Query Frame = -2
Query:    5 KAMETGEAMQITSLDTRVENKNGRQEPVEDLETVSLGPENPGKTIRI---GSRLKGEQKQELVKCLQAHADVFAWTHEDMPGIDPEVACH--KLAIKKG--ARAVRQKRRCFNQERYEAINGEVEKLLRAGFIREVNYPEWISNVVL---VKKANGKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSKIRE 790
            +A+  G    + S+  R  +K  + EPV ++ T  +  ENP K I I   G RL  E+     + +Q   ++      + P +DP       K +IK    ++A++ K   ++    E  + ++++LL    I+    P      ++    +K  GK RM V++  +NKA   D++ LP  D+L+    G  + S  D  SG+ Q+ + ++    TAF   +G + + V+PFGLK A + +QR +++ F+ +  K   VYVDD++  S   E
Sbjct:  149 RAVRVGTEGFLESMKKR--SKTQQPEPV-NISTNKI--ENPLKEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENP-LDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNEE 413          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: POL_CAMVS (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) GN=ORF V PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.779e-14
Identity = 74/272 (27.21%), Postives = 133/272 (48.90%), Query Frame = -2
Query:    5 KAMETGEAMQITSLDTRVENKNGRQEPVEDLETVSLGPENPGKTIRI---GSRLKGEQKQELVKCLQAHADVFAWTHEDMPGIDPEVACH--KLAIKKG--ARAVRQKRRCFNQERYEAINGEVEKLLRAGFIREVNYPEWISNVVL---VKKANGKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSKIRE 790
            +A+  G    + S+  R  +K  + EPV ++ T  +  ENP + I I   G RL  E+     + +Q   ++      + P +DP       K +IK    ++A++ K   ++    E  + ++++LL    I+    P      ++    +K  GK RM V++  +NKA   D++ LP  D+L+    G  + S  D  SG+ Q+ + ++    TAF   +G + + V+PFGLK A + +QR +++ F+ +  K   VYVDD++  S   E
Sbjct:  149 RAVRVGTEGFLESMKKR--SKTQQPEPV-NISTNKI--ENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENP-LDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNEE 413          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: POL_CAMVC (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) GN=ORF V PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.418e-14
Identity = 70/253 (27.67%), Postives = 125/253 (49.41%), Query Frame = -2
Query:    5 NKNGRQEPVEDLETVSLGPENPGKTIRI---GSRLKGEQKQELVKCLQAHADVFAWTHEDMPGIDPEVACH--KLAIKKG--ARAVRQKRRCFNQERYEAINGEVEKLLRAGFIREVNYPEWISNVVL---VKKANGKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSKIRE 733
            +K  + EPV ++ T  +  ENP + I I   G RL  E+     + +Q   ++      + P +DP       K +IK    ++A++ K   ++    E  + ++++LL    I+    P      ++    +K  GK RM V++  +NKA   D++ LP  D+L+    G  + S  D  SG+ Q+ + ++    TAF   +G + + V+PFGLK A + +QR +++ F+ +  K   VYVDD++  S   E
Sbjct:  166 SKTQQPEPV-NISTNKI--ENPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENP-LDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNEE 413          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: POL_COYMV (Putative polyprotein OS=Commelina yellow mottle virus PE=4 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.875e-13
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = -2
Query:    5 KKANGKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSKIRE 367
            K+  GK RM  ++  LN+    D + LP I+ ++       + S  D  SG+ Q+ M E+    TAF+    L+ + VMPFGLKNA A +QR ++ VFK    K + VY+DD++  S+  E
Sbjct: 1457 KEKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKG-TEKFIAVYIDDILVFSETAE 1576          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: POL_CAMVN (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153) GN=ORF V PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.875e-13
Identity = 73/272 (26.84%), Postives = 132/272 (48.53%), Query Frame = -2
Query:    5 KAMETGEAMQITSLDTRVENKNGRQEPVEDLETVSLGPENPGKTIRI---GSRLKGEQKQELVKCLQAHADVFAWTHEDMPGIDPEVACH--KLAIKKG--ARAVRQKRRCFNQERYEAINGEVEKLLRAGFIREVNYPEWISNVVLVKKAN---GKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSKIRE 790
            +A+  G    + S+  R  +K  + EPV ++ T  +  ENP + I I   G RL  E+     + +Q   ++      + P +DP       K +IK    ++A++ K   ++    E  + ++++LL    I+    P      ++  +A    G  RM V++  +NKA   D++ LP  D+L+    G  + S  D  SG+ Q+ + ++    TAF   +G + + V+PFGLK A + +QR +++ F+ +  K   VYVDD++  S   E
Sbjct:  150 RAVRVGTEGFLESMKKR--SKTQQPEPV-NISTNKI--ENPLEEIAILSEGRRLSEEKLFITQQRMQKTEELLEKVCSENP-LDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDIVVFSNNEE 414          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: POL_FMVD (Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.456e-13
Identity = 51/167 (30.54%), Postives = 88/167 (52.69%), Query Frame = -2
Query:   17 RAVRQKRRCFNQERYEAINGEVEKLLRAGFIREVNYPEWISNVVLVK----KANGKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKS 505
            + +R K   ++ +  E    ++++LL  G I   +  + +S   LV+    +  GK RM V++  +N+A   DS  LP + +L+    G ++ S  D  SG+ Q+ + E+ ++ TAF   +G F ++V+PFGLK A + +QR +         K   VYVDD+I  S
Sbjct:  238 KVIRVKPMSYSPQDREGFAKQIKELLDLGLIIP-SKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCMVYVDDIIVFS 402          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: POL_CAMVD (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.307e-13
Identity = 48/171 (28.07%), Postives = 89/171 (52.05%), Query Frame = -2
Query:    5 ARAVRQKRRCFNQERYEAINGEVEKLLRAGFIREVNYPEWISNVVL---VKKANGKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSKIRE 508
            ++A++ K   ++    E  + ++++LL    I+    P      ++    +K  GK RM V++  +NKA   D++  P  D+L+    G  + S  D  SG+ Q+ + ++    TAF   +G + + V+PFGLK A + +QR +++ F+ +  K   VYVDD++  S   E
Sbjct:  239 SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNEE 408          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: POL_SOCMV (Enzymatic polyprotein OS=Soybean chlorotic mottle virus GN=ORF V PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.619e-12
Identity = 49/150 (32.67%), Postives = 82/150 (54.67%), Query Frame = -2
Query:   14 EVEKLLRAGFIREVNYPE-----WISNVVLVKKANGKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAF-ITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSK 445
            E E LL+ G IRE   P      ++ N   +K+  GK RM +++  +N+A   DS+ LP+ D +++   G    S +DA SGY Q+ ++E  +  TAF    +  + + V+ FGLK A + YQR +++  K L    +  Y+DD++  +K
Sbjct:  222 ECEDLLKKGLIRESQSPHSAPAFYVENHNEIKR--GKRRMVINYKKMNEATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSCPPQKHYEWNVLSFGLKQAPSIYQRFMDQSLKGLEHICL-AYIDDILIFTK 368          
The following BLAST results are available for this feature:
BLAST of CX674999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RTF23_SCHPO2.004e-1532.45Retrotransposable element Tf2 155 kDa protein type... [more]
RTF22_SCHPO2.004e-1532.45Retrotransposable element Tf2 155 kDa protein type... [more]
POL_CAMVE1.696e-1427.57Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVS3.779e-1427.21Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVC8.418e-1427.67Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_COYMV1.875e-1336.36Putative polyprotein OS=Commelina yellow mottle vi... [more]
POL_CAMVN1.875e-1326.84Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_FMVD5.456e-1330.54Enzymatic polyprotein OS=Figwort mosaic virus (str... [more]
POL_CAMVD9.307e-1328.07Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_SOCMV4.619e-1232.67Enzymatic polyprotein OS=Soybean chlorotic mottle ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59A07-A13-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674999 ID=CX674999; Name=CX674999; organism=Citrus sinensis; type=EST; length=836bp
TTCCTTCCCGTATTTTGGACTTGGTGATCATGTCATCCACGTACACCTCC
ATGGTTTTCCCAATCAACGGCTTAAAGACTTTGTTCACCAGCCTCTGATA
GGTGGCCCCAGCATTTTTGAGACCAAATGGCATTACCCTATAACAGAACA
AACCCTTGTTAGTGATGAAAGCCGTGCTCTCCTCGTCCTGCTCGTACATG
GGGATCTGGTTGTATCCCGAGAACGCGTCCATGAAGCTAAGCAGAGCGTG
TCCAGCCGTTGAATCTACTAGCTGATCGATCTTTGGTAAAGGGAAGCTGT
CCTTTGGGCACGCCTTATTGAGGCCTGTGAAATCCACACACATCCTCCAC
TTGCCATTCGCTTTCTTTACCAACACCACATTCGATATCCATTCAGGGTA
ATTGACTTCCCGAATGAACCCTGCTCTCAAGAGCTTCTCCACCTCGCCAT
TTATAGCCTCATACCTCTCCTGGTTGAAGCACCTCCTCTTCTGCCTTACT
GCCCGAGCACCTTTCTTTATTGCCAGCTTATGACATGCTACCTCAGGGTC
AATCCCTGGCATGTCTTCATGTGTCCAAGCAAACACATCTGCATGAGCCT
GTAAGCATTTCACCAACTCCTGCTTTTGCTCTCCCTTAAGTCTTGACCCG
ATTCTGATTGTCTTTCCCGGATTCTCTGGTCCCAGGCTTACAGTTTCCAG
ATCCTCTACAGGTTCTTGTCTGCCATTCTTGTTTTCCACTCGGGTATCGA
GGGATGTTATCTGCATTGCTTCCCCTGTTTCCATCGCTTTTCACTTGCTT
TACTCCCCTTCTTGCTATCAACAGAAGCTTTTTGAT
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