CX674998

Overview
NameCX674998
Unique NameCX674998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: FADH_BACSU (Probable 2,4-dienoyl-CoA reductase OS=Bacillus subtilis GN=fadH PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.210e-12
Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = -3
Query:   89 WQDVIDLNLTGVFLCTQVHIPMILLVMLMDAKVYWN*GHLSLQXXXXXXXXXXKGRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASR-NINVNTIAPGFIASDMTAKLGEDLEK---KILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 583
            W+ VI++ L G F C+Q             A  +W                  +G I+N+A+           + +AAKAGV+ LT+ +A E+ S+  I  N IAPG I     A+   + EK   + +  +PLGR G PEE+  L  FL  + A+ YI G  + +DGG
Sbjct:  104 WKAVIEIVLNGTFFCSQA------------AARHW-------------IDQKQQGVILNMAATYAWGAGAGVVHSAAAKAGVLSLTRTLAVEWGSKYGIRTNAIAPGPIERTGGAEKLFESEKAMARTMNSVPLGRLGTPEEIAALAAFLLSDEAS-YINGDCITMDGG 246          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11
Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = -3
Query:   89 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGED--LEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 421
            G ++ ++SV G V       Y+ +K  ++GLTK  A E A +NI VN +APG I +  ++ L ++   E+ I E + + R G+PE+ VG+  FL    A+ YI G+ + + GG
Sbjct:  144 GSVVIVSSVAGFVLFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTHFSSVLWKEKAREEMIKETMQIRRLGKPEDCVGIVSFLCSEDAS-YINGETVVVGGG 255          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: DHSO_RHOSH (Sorbitol dehydrogenase OS=Rhodobacter sphaeroides GN=polS PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.606e-11
Identity = 43/122 (35.25%), Postives = 62/122 (50.82%), Query Frame = -3
Query:   89 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASD----MTAKLGE-------DLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 421
            G+IIN+AS  G  G      Y A KA VI LT++         INVN IAPG +  +    + AK  +       + ++++   +P GR G+ E++ G+  FLA  P   YI  Q  N+DGG
Sbjct:  132 GKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFGRMGRAEDLTGMAIFLA-TPEADYIVAQTYNVDGG 252          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: BDHA_RHIME (D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium meliloti GN=bdhA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.606e-11
Identity = 48/125 (38.40%), Postives = 71/125 (56.80%), Query Frame = -3
Query:   89 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGED-------LEKKILEKIPLGRYGQP-------EEVVGLEEFLAINPATGYITGQVLNIDGG 421
            GRIINIAS  GLV +  ++ Y AAK G++GLTK VA E A   + VN+I PG++ + +  K   D        E++++ ++ L   GQP       E+V  L  +LA + A   ITG  +++DGG
Sbjct:  133 GRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVML--KGQPTKKFITVEQVASLALYLAGDDA-AQITGTHVSMDGG 254          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: Y019_THEMA (Uncharacterized oxidoreductase TM_0019 OS=Thermotoga maritima GN=TM_0019 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 51/173 (29.48%), Postives = 78/173 (45.09%), Query Frame = -3
Query:   80 KWQDVIDLNLTGVFLCTQVHIPMILLVMLMDAKVYWN*GHLSLQXXXXXXXXXXKGRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLG----EDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMVM 586
            +W+ VI +NLTG ++C++     ++                              G IINIAS        D   YSA+K G++ LT ++A   +  +I V +I+PG+I +    K       DL     E+ P GR G P ++  L  FLA +   G+ITG    +DGGM +
Sbjct:  104 EWERVIRVNLTGPYICSRYCAEEMI--------------------------KRGGGVIINIASTRAFQSEPDTEPYSASKGGLVALTHSLAVSLSRYHIRVVSISPGWIETSEWKKKSLRKKPDLRPIDHEQHPAGRVGNPLDIAHLCVFLADDEKAGFITGTNFIVDGGMTV 250          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: SOU1_SCHPO (Sorbose reductase sou1 OS=Schizosaccharomyces pombe GN=sou1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = -3
Query:   89 GRIINIASVVGLVGNIDQ--ANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 421
            G +I  AS+ G + N  Q  A+Y A KA V  L +A+A E+A     VN+++PG+I +D+T    E+L KK  E  P  R G P+E+ G   +LA + A+ Y TG  + +DGG
Sbjct:  141 GSLIFTASMSGHIANWPQQWASYHATKAAVKHLARALAVEWAPF-ARVNSVSPGYIDTDLTLYADENLRKKWKEYTPQARIGLPDELPGAYLYLA-SDASSYCTGSDIIVDGG 251          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: FOX2_YEAST (Peroxisomal hydratase-dehydrogenase-epimerase OS=Saccharomyces cerevisiae GN=FOX2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = -3
Query:  146 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFL 421
            GRIIN AS  GL GN  QANYSAAK G++GL + +AKE A  NINVN+IAP    S MT  +   L   IL+++       PE++V L  +L
Sbjct:  145 GRIINTASPAGLFGNFGQANYSAAKMGLVGLAETLAKEGAKYNINVNSIAP-LARSRMTENV---LPPHILKQL------GPEKIVPLVLYL 226          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: HCDR_XANP2 (2-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecD PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 43/112 (38.39%), Postives = 62/112 (55.36%), Query Frame = -3
Query:   92 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTA-KLGE-DLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDG 421
            G I+NIASV  LV    ++ Y+ +K  V+ LTK+VA +YA   I  N + PG I + MT  +L + +L  ++L +IP    G   +V     FLA   AT Y+ G  L +DG
Sbjct:  135 GVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQVADAVMFLAGEDAT-YVNGAALVMDG 245          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: FOX2_CANTR (Peroxisomal hydratase-dehydrogenase-epimerase OS=Candida tropicalis PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = -3
Query:   83 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMV 421
            GRIINI S  G+ GN  QANYS++KAG++GL+K +A E A  NI VN +AP    + MT  +  + +K +            ++V  L  +L  +     +TG+   I GG +
Sbjct:  447 GRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAP-HAETAMTLTIFREQDKNLY---------HADQVAPLLVYLGTDDVP--VTGETFEIGGGWI 547          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: DHRS4_MOUSE (Dehydrogenase/reductase SDR family member 4 OS=Mus musculus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = -3
Query:   89 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKK--ILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 421
            G ++ + SV G         Y+ +K  ++GLTK  A E A +NI VN +APG I +  ++ L E+  ++  I E + + R G+PE+  G+  FL    A+ YI G+ + + GG
Sbjct:  144 GSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTRFSSVLWEEKAREDFIKEAMQIRRLGKPEDCAGIVSFLCSEDAS-YINGETVVVGGG 255          
The following BLAST results are available for this feature:
BLAST of CX674998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
FADH_BACSU7.210e-1231.36Probable 2,4-dienoyl-CoA reductase OS=Bacillus sub... [more]
DHRS4_RAT1.230e-1135.40Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
DHSO_RHOSH1.606e-1135.25Sorbitol dehydrogenase OS=Rhodobacter sphaeroides ... [more]
BDHA_RHIME1.606e-1138.40D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium ... [more]
Y019_THEMA2.098e-1129.48Uncharacterized oxidoreductase TM_0019 OS=Thermoto... [more]
SOU1_SCHPO2.098e-1139.82Sorbose reductase sou1 OS=Schizosaccharomyces pomb... [more]
FOX2_YEAST2.098e-1148.91Peroxisomal hydratase-dehydrogenase-epimerase OS=S... [more]
HCDR_XANP27.972e-1138.392-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]
FOX2_CANTR7.972e-1136.28Peroxisomal hydratase-dehydrogenase-epimerase OS=C... [more]
DHRS4_MOUSE7.972e-1133.63Dehydrogenase/reductase SDR family member 4 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59A04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59A04-A7-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674998 ID=CX674998; Name=CX674998; organism=Citrus sinensis; type=EST; length=594bp
TTTCAACCCATTCGATCTTACATATGATAGCTACAGGTCAGAACTGAAAC
TAAACCAGGCATAATGGGTCACTGACCTACATAACCATTCCTCCGTCAAT
ATTAAGCACCTGTCCAGTAATGTAACCGGTTGCGGGATTGATGGCCAAGA
ATTCCTCCAGTCCAACAACTTCTTCAGGTTGGCCATACCTTCCTAACGGG
ATTTTCTCCAAGATCTTCTTTTCTAGGTCTTCGCCAAGCTTGGCGGTCAT
ATCAGACGCGATGAATCCTGGTGCAATAGTATTGACATTAATGTTTCTGC
TTGCATATTCCTTTGCAACAGCTTTTGTCAGGCCAATAACACCTGCTTTT
GCAGCACTGTAATTGGCTTGGTCAATATTTCCAACCAGACCAACAACTGA
TGCTATATTGATTATTCTTCCCTTTTTCTTCTTCATCATGATTTTGGCTG
CTGCCTGCAAAGATAAATGGCCTCAGTTCCAATATACTTTAGCATCCATT
AGCATAACTAGTAAGATCATAGGAATGTGCACCTGTGTACACAGGAATAC
ACCTGTAAGATTCAGATCAATAACGTCCTGCCATTTGTGACCCT
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