CX674998

Overview
NameCX674998
Unique NameCX674998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: CMTB_PSEPU (2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase OS=Pseudomonas putida GN=cmtB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.695e-16
Identity = 45/117 (38.46%), Postives = 74/117 (63.25%), Query Frame = -3
Query:   80 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKL---GEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMVM 421
            GRIINI +     G  D A Y+AAK G+ GLT  +A+E+A + + VNT+AP  + +++  ++     +L ++ L+ IP+GR G+ EEV  +  +LA  P   ++TGQV++++GG  M
Sbjct:  143 GRIINIGADSVRNGLPDHAAYNAAKGGMHGLTTGLAREFARQGVTVNTVAPCAVNTEVWVRIKNANPELAQRFLDVIPMGRVGEIEEVASMVGYLA-QPEAAFVTGQVISVNGGSTM 258          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: CMTB_PSEP1 (2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=cmtB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.695e-16
Identity = 45/117 (38.46%), Postives = 74/117 (63.25%), Query Frame = -3
Query:   80 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKL---GEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMVM 421
            GRIINI +     G  D A Y+AAK G+ GLT  +A+E+A + + VNT+AP  + +++  ++     +L ++ L+ IP+GR G+ EEV  +  +LA  P   ++TGQV++++GG  M
Sbjct:  143 GRIINIGADSVRNGLPDHAAYNAAKGGMHGLTTGLAREFARQGVTVNTVAPCAVNTEVWVRIKNANPELAQRFLDVIPMGRVGEIEEVASMVGYLA-QPEAAFVTGQVISVNGGSTM 258          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: RHLG_PSEAE (Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase OS=Pseudomonas aeruginosa GN=rhlG PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.825e-16
Identity = 58/168 (34.52%), Postives = 82/168 (48.81%), Query Frame = -3
Query:   89 WQDVIDLNLTGVFLCTQVHIPMILLVMLMDAKVYWN*GHLSLQXXXXXXXXXXKGRIINIASVVGLVGNIDQAN-YSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKKILE--KIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 583
            W+ V+ LN+T VF C Q  +P++                                R+INI SV G+    +QA  Y  +KA +  L++ +AKE    +INVN IAPG   S MT  +  D +    +   IP+GR+G+PEE+  L   LA   A  Y+TG V+ IDGG
Sbjct:  109 WEKVMQLNVTSVFSCIQQLLPLL----------------------RRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGRWGRPEEMAALAISLA-GTAGAYMTGNVIPIDGG 253          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: YGCW_ECOLI (Uncharacterized oxidoreductase ygcW OS=Escherichia coli (strain K12) GN=ygcW PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.231e-16
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = -3
Query:   80 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMT--AKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMVM 421
            G+IINI S+   +G      YSA K  + G TKA   E    NI VN IAPG+ A+D+T   +   +  +++L+ IP  R+G  ++++G   FLA +PA+ Y+ G +L +DGG ++
Sbjct:  146 GKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA-SPASNYVNGHLLVVDGGYLV 260          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: HDHA_CLOSO (NADP-dependent 7-alpha-hydroxysteroid dehydrogenase OS=Clostridium sordellii PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.834e-15
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = -3
Query:   89 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTA-KLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 421
            G I+NI+SV G + +I +  Y  +K+GV  +TK +A +YA   I  N + PG IA+D     + ++  K  L  +PL R G PE++     F   +  + YITG +L + GG
Sbjct:  138 GSIVNISSVGGSIPDISRIGYGVSKSGVNNITKQIAIQYAKYGIRCNAVLPGLIATDAAMNSMPDEFRKSFLSHVPLNRIGNPEDIANSVLFFVPSEDSSYITGSILEVSGG 249          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.834e-15
Identity = 53/169 (31.36%), Postives = 83/169 (49.11%), Query Frame = -3
Query:   80 WQDVIDLNLTGVFLCTQVHIPMILLVMLMDAKVYWN*GHLSLQXXXXXXXXXXKGRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLG-EDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMVM 583
            WQ VID+N+TG FL  +  +  ++                             KG ++NI+SV   +       YS +K G+  +T+ +A  YA + I VN IAPG IA++       E+  +K L+KIP+  +G+PEEV     +L ++    Y+TG  L +DGGM +
Sbjct:  110 WQRVIDVNVTGTFLGAKAALNHMM-------------------------KNNIKGNVLNISSVHQQIPRPVNVQYSTSKGGIKMMTETLALNYADKGIRVNAIAPGTIATESNVDTKKEESRQKQLKKIPMKAFGKPEEVAAAAAWL-VSEEASYVTGATLFVDGGMTL 252          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.395e-15
Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = -3
Query:   80 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMT-AKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMVM 421
            G II ++S+ G+V     + YSA K  +  L + +A E+AS  I  N +AP  IA+ +  A   ++ +K ++ + PLGR+G+PEEV  L  FL + PA  YITGQ + +DGG+ +
Sbjct:  144 GNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAFLCM-PAASYITGQTICVDGGLTV 257          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: LINX_PSEPA (2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase OS=Pseudomonas paucimobilis GN=linX PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.395e-15
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = -3
Query:   89 WQDVIDLNLTGVFLCTQVHIPMILLVMLMDAKVYWN*GHLSLQXXXXXXXXXXKGRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 583
            W  ++ +N T +FL  +  IP ++                              G IINI+S++G+      A+Y A KA V  ++KA A E+  R + VNTI PG + + +TA +  D+ K+   +IP+G+ G P ++     FLA + A  YITG  L IDGG
Sbjct:  108 WNKMVAVNQTAIFLGIKAAIPELV--------------------------KSGNGSIINISSLIGMFPTAGNASYCATKAAVRIMSKAAALEFVDRGVRVNTIVPGGMNTPITANVPPDVLKQQTSQIPMGKLGDPIDIANGALFLASDEAK-YITGVDLPIDGG 245          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: GNO_GLUOX (Gluconate 5-dehydrogenase OS=Gluconobacter oxydans GN=gno PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.395e-15
Identity = 43/116 (37.07%), Postives = 71/116 (61.21%), Query Frame = -3
Query:   80 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKL--GEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMVM 421
            G+I+NI SV   +     A Y+A K  V  LTK +A ++    + +N +APG+ A++MT +L   E+    + ++ P GR+GQ EE+VG   FL+ + A+ ++ GQVL +DGG+ +
Sbjct:  140 GKIVNICSVQSELARPGIAPYTATKGAVKNLTKGMATDWGRHGLQINGLAPGYFATEMTERLVADEEFTDWLCKRTPAGRWGQVEELVGAAVFLS-SRASSFVNGQVLMVDGGITV 254          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: BAIA1_EUBSP (Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (strain VPI 12708) GN=baiA1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.395e-15
Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = -3
Query:   92 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDG 421
            G IIN ASV G+ G++    Y  +KAGVIGLT  + +E   +NI V  +APG + +DMT  L  ++ +  L+ +P+ R  +PEE+  +  FLA + A+G IT   +++DG
Sbjct:  137 GVIINTASVTGIYGSLSGIGYPTSKAGVIGLTHGLGREIIRKNIRVVGVAPGVVDTDMTKGLPPEILEDYLKTLPMKRMLKPEEIANVYLFLASDLASG-ITATTISVDG 245          
The following BLAST results are available for this feature:
BLAST of CX674998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CMTB_PSEPU3.695e-1638.462,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase O... [more]
CMTB_PSEP13.695e-1638.462,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase O... [more]
RHLG_PSEAE4.825e-1634.52Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-... [more]
YGCW_ECOLI8.231e-1637.93Uncharacterized oxidoreductase ygcW OS=Escherichia... [more]
HDHA_CLOSO1.834e-1535.71NADP-dependent 7-alpha-hydroxysteroid dehydrogenas... [more]
DHG2_BACSU1.834e-1531.36Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]
TRNH1_ARATH2.395e-1539.13Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
LINX_PSEPA2.395e-1532.122,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydroge... [more]
GNO_GLUOX2.395e-1537.07Gluconate 5-dehydrogenase OS=Gluconobacter oxydans... [more]
BAIA1_EUBSP2.395e-1540.00Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59A04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59A04-A7-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674998 ID=CX674998; Name=CX674998; organism=Citrus sinensis; type=EST; length=594bp
TTTCAACCCATTCGATCTTACATATGATAGCTACAGGTCAGAACTGAAAC
TAAACCAGGCATAATGGGTCACTGACCTACATAACCATTCCTCCGTCAAT
ATTAAGCACCTGTCCAGTAATGTAACCGGTTGCGGGATTGATGGCCAAGA
ATTCCTCCAGTCCAACAACTTCTTCAGGTTGGCCATACCTTCCTAACGGG
ATTTTCTCCAAGATCTTCTTTTCTAGGTCTTCGCCAAGCTTGGCGGTCAT
ATCAGACGCGATGAATCCTGGTGCAATAGTATTGACATTAATGTTTCTGC
TTGCATATTCCTTTGCAACAGCTTTTGTCAGGCCAATAACACCTGCTTTT
GCAGCACTGTAATTGGCTTGGTCAATATTTCCAACCAGACCAACAACTGA
TGCTATATTGATTATTCTTCCCTTTTTCTTCTTCATCATGATTTTGGCTG
CTGCCTGCAAAGATAAATGGCCTCAGTTCCAATATACTTTAGCATCCATT
AGCATAACTAGTAAGATCATAGGAATGTGCACCTGTGTACACAGGAATAC
ACCTGTAAGATTCAGATCAATAACGTCCTGCCATTTGTGACCCT
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