FC871921

Overview
NameFC871921
Unique NameFC871921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9755 contig Csv1_Contig9755:317..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: RPN11_ENCCU (26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi GN=RPN11 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.812e-49
Identity = 109/215 (50.70%), Postives = 131/215 (60.93%), Query Frame = 3
Query:    6 MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 650
            M+ +LK TGR E VVGWYHSHPGFGCWLS VDI+TQQSFE L +RAVAVVVDPIQSVKGKVVIDAFRLI+ Q  +LG EPRQ TSN+G+L  P++ + IHGLN+HYYS  I  R                W D L L   D  SK      +E L L   Y KA +EE  L  +   +A VGR D ++ L E     +  N + +L   +   IF
Sbjct:   85 MMSILKATGRHETVVGWYHSHPGFGCWLSTVDISTQQSFEKLCKRAVAVVVDPIQSVKGKVVIDAFRLIDNQLGVLGGEPRQVTSNIGYLKTPTLISIIHGLNKHYYSFNITCRKNDFEQKMLLNLHRKTWADNLKLG--DVRSKR-----EEALKLIESYGKAFEEEKNLAGKNPDMAKVGRIDYRRRLLEKCEESIMENTIYSLLYSIHRYIF 292          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: YPT5_CAEEL (Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans GN=F37A4.5 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.247e-46
Identity = 98/221 (44.34%), Postives = 132/221 (59.73%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMML-----GQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELP------PEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD 638
            +D+LK  GR E VVGWYHSHPGFGCWLS VD+NTQQSFEAL+ RAVAVVVDPIQSVKGKV++DAFR +NP  + +       EPRQTTSNLGHL KPS+ + +HGL   YYS+ + YR                W D L +  +    K  E+  + +  L   +NK + E  E P        +  +   G+ +AK+ L+   S+L++ ++   L  M++
Sbjct:   94 MDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVKGKVMLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVAYRMGSNEQKMLMCLNKKSWYDQLNMSTYSELEKKQEEKFKSINKLIAVFNKDIDEVKEKPIADKKGKTQEEVKKFGKINAKQQLQMITSSLLNDSLCHQLTAMIN 314          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_DICDI (COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum GN=csn5 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.111e-16
Identity = 47/114 (41.23%), Postives = 69/114 (60.53%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAF-IHGLNRHYYSIAINY 344
            L+++KQTGR E  +GWYHSHPG+GCWLSG+D+ TQ   +  ++  + +V+DP ++V  GKV I AFR   PQ     + P +  S    +    I+ F +H   + YYS+ I Y
Sbjct:  120 LELIKQTGRLENALGWYHSHPGYGCWLSGIDVGTQSVNQQYSEPWLGIVIDPTRTVSAGKVEIGAFRTY-PQGY---KPPNEGPSEYQSIPLSKIEDFGVH--CKQYYSLEITY 227          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_USTMA (COP9 signalosome complex subunit 5 OS=Ustilago maydis GN=RRI1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.718e-16
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFR 206
            LD  K+ GR E VVGWYHSHPG+GCWLSG+D+NTQ++ +      VA+V+DP +++  GKV I AFR
Sbjct:  129 LDHSKEVGRLENVVGWYHSHPGYGCWLSGIDVNTQRTNQQFQDPFVAIVIDPNRTISSGKVDIGAFR 195          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_DROME (COP9 signalosome complex subunit 5 OS=Drosophila melanogaster GN=CSN5 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15
Identity = 47/114 (41.23%), Postives = 69/114 (60.53%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAF-IHGLNRHYYSIAINY 344
            ++  K+ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   +  VA+VVDP+++V  GKV + AFR          +EP +  +    LNK  I+ F +H   + YY + I+Y
Sbjct:  118 MEAAKEVGRMEHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIVVDPVRTVSAGKVCLGAFRTYPKGYKPPNEEPSEYQTI--PLNK--IEDFGVH--CKQYYPLEISY 225          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_XENLA (COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.651e-15
Identity = 64/226 (28.32%), Postives = 105/226 (46.46%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLG-QEPRQTTSNLGHLNKPSIQAF-IHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKA------------VQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDT 641
            ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR     T   G + P +  S    +    I+ F +H   + YY++ + Y                 W + L+      ++   E T  ++ +L+ K  ++            ++  D    +KLA A    +D+ K   E +  LMS  I   L   ++T
Sbjct:  119 IENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR-----TYPKGYKPPDEGPSEYQTIPLNKIEDFGVH--CKQYYALEVTYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNA---EYTTGQVFDLSEKLEQSEAQLGRGSFMLGLESHDRKSEDKLAKAT---RDSCKTTIEAIHGLMSQVIKDKLFNQINT 331          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_EMENI (COP9 signalosome complex subunit 5 OS=Emericella nidulans GN=rri1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.651e-15
Identity = 61/213 (28.64%), Postives = 95/213 (44.60%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQ-------DAKKHLEEHVSNLMSSNIVQTL 623
            L   ++ GR E  VGWYHSHPG+GCWLSG+D++T Q  + ++   VAVV+DP +++  GKV I AFR          +E  +       LNK       H    HYYS+ ++                  W   L+         T +   ++ML+L+ K  +  +  +  PP   A   V  Q       D ++ + E V  L+++ +   L
Sbjct:  117 LQSCREAGRMENAVGWYHSHPGYGCWLSGIDVST-QDMQQMSGPFVAVVIDPERTISAGKVDIGAFRTFPKDYTPPKEEQEEDEYQTVPLNKAE-DFGAHA--SHYYSLEVSLFKSALDTEILSLLWNKYWVATLSQSPL---FTTRDYGSKQMLDLSQKTRRVARGIESNPPRGGAPTQVRDQQLERVVKDGQRIVSEEVKGLLAAEVKMQL 322          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_YARLI (COP9 signalosome complex subunit 5 OS=Yarrowia lipolytica GN=RRI1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.380e-15
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGL-NRHYYSIAINY 344
            L  LK  GR E +VGWYHSHPG+GCWLSG+D++TQ   +   +  +AVVVDP +++  GKV I AFR          + P++ T      + P  +A  +G  +  YY + +++
Sbjct:  122 LQGLKDVGRRENIVGWYHSHPGYGCWLSGIDVDTQFQNQQFQEPFLAVVVDPNRTISAGKVEIGAFRTYPKDY----KPPKKATKQNQDQSVPLSKAKDYGAHSERYYELDVSF 231          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_GIBZE (COP9 signalosome complex subunit 5 OS=Gibberella zeae GN=RRI1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.259e-14
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLN-RHYYSIAINY 344
            LD+ +  GR E VVGWYHSHPG+GCWLSG+D++T+   +      +AVV+DP +++  GKV I AFR     T     +P    ++ G    P  +A   G +   YYS+ +++
Sbjct:  118 LDLCRAQGRQENVVGWYHSHPGYGCWLSGIDVDTEAMQQQFQDPFLAVVIDPDRTINSGKVDIGAFR-----TYPADYKPSGGVTSDGFQAVPLAKAAEFGAHASRYYSLEVSH 226          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_DANRE (COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.259e-14
Identity = 64/226 (28.32%), Postives = 105/226 (46.46%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLG-QEPRQTTSNLGHLNKPSIQAF-IHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKA------------VQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDT 641
            ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR     T   G + P +  S    +    I+ F +H   + YY++ ++Y                 W + L+      ++   + T  ++ +L+ K  +A            +   D    +KLA A    +D+ K   E +  LMS  I   L   ++T
Sbjct:  119 IENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR-----TYPKGYKPPDEGPSEYQTIPLNKIEDFGVH--CKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNA---DYTTGQVFDLSEKLEQAEAQLGRGSFMLGLDTHDRKSEDKLAKAT---RDSCKTTIEAIHGLMSQVIKDKLFNQVNT 331          
The following BLAST results are available for this feature:
BLAST of FC871921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RPN11_ENCCU7.812e-4950.7026S proteasome regulatory subunit RPN11 OS=Encepha... [more]
YPT5_CAEEL1.247e-4644.34Uncharacterized protein F37A4.5 OS=Caenorhabditis ... [more]
CSN5_DICDI5.111e-1641.23COP9 signalosome complex subunit 5 OS=Dictyosteliu... [more]
CSN5_USTMA8.718e-1656.72COP9 signalosome complex subunit 5 OS=Ustilago may... [more]
CSN5_DROME1.942e-1541.23COP9 signalosome complex subunit 5 OS=Drosophila m... [more]
CSN5_XENLA5.651e-1528.32COP9 signalosome complex subunit 5 OS=Xenopus laev... [more]
CSN5_EMENI5.651e-1528.64COP9 signalosome complex subunit 5 OS=Emericella n... [more]
CSN5_YARLI7.380e-1538.60COP9 signalosome complex subunit 5 OS=Yarrowia lip... [more]
CSN5_GIBZE1.259e-1438.60COP9 signalosome complex subunit 5 OS=Gibberella z... [more]
CSN5_DANRE1.259e-1428.32COP9 signalosome complex subunit 5 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CF11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871921 ID=FC871921; Name=FC871921; organism=Citrus sinensis; type=EST; length=821bp
CTAACATGCTTGACATGCTCAAGCAGACTGGAAGACCAGAAATGGTTGTT
GGATGGTATCACTCACATCCTGGATTTGGTTGCTGGCTCTCTGGTGTTGA
CATAAACACACAGCAGAGTTTTGAAGCTTTGAATCAAAGGGCTGTTGCTG
TGGTTGTGGATCCAATCCAGAGCGTGAAAGGGAAGGTAGTGATTGATGCC
TTCCGCTTGATTAATCCCCAAACCATGATGCTTGGCCAAGAACCACGGCA
GACAACTTCCAATCTTGGTCATCTTAATAAGCCATCCATCCAAGCATTTA
TCCATGGCTTGAATAGACATTATTATTCTATTGCCATCAATTACAGGAAG
AATGAACTTGAAGAAAAGATGCTACTAAATCTGCACAAGAAGAAATGGAC
TGATGGATTAACACTTCATCGCTTTGATTGTCATTCCAAAACCAATGAAC
AGACTGTCCAGGAGATGTTAAATTTGGCTGTCAAATATAACAAGGCAGTT
CAAGAAGAAGACGAGCTGCCGCCAGAGAAGCTGGCCATTGCTAATGTGGG
AAGGCAAGATGCAAAGAAGCACCTTGAGGAACATGTCTCCAACTTGATGT
CCTCAAACATAGTTCAAACTTTGGGAACCATGCTTGATACAGTCATATTC
TAGATGTTGGTTTGTTTTCTGTAGTTTCACTAGCTTCACTCTTGTTTGAC
TATTTGTATGGCATTTACAGTTTGAATTTGTGCTTTATAATTTAACATTT
TAATTCTGAAGGCCTATCCTTTTGTCATGGATGTGCTGGTTTGTNGCTGA
ACGTAGTATATGATTGTGGCT
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