FC871921
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_XENTR (COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.644e-14 Identity = 63/226 (27.88%), Postives = 105/226 (46.46%), Query Frame = 3 Query: 9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLG-QEPRQTTSNLGHLNKPSIQAF-IHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKA------------VQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDT 641 ++ KQ GR E +GWYHSHPG+GCWLSG+D++TQ + + VAVV+DP +++ GKV + AFR T G + P + S + I+ F +H + YY++ + Y W + L+ ++ + T ++ +L+ K ++ ++ D +KLA A +D+ K E + LMS I L ++T Sbjct: 121 IENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR-----TYPKGYKPPDEGPSEYQTIPLNKIEDFGVH--CKQYYALEVTYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNA---DYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSEDKLAKAT---RDSCKTTIEAIHGLMSQVIKDKLFNQINT 333
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_MOUSE (COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3) HSP 1 Score: 79.337 bits (194), Expect = 2.804e-14 Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 3 Query: 9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 206 ++ KQ GR E +GWYHSHPG+GCWLSG+D++TQ + + VAVV+DP +++ GKV + AFR Sbjct: 121 IENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 187
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_HUMAN (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4) HSP 1 Score: 79.337 bits (194), Expect = 2.804e-14 Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 3 Query: 9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 206 ++ KQ GR E +GWYHSHPG+GCWLSG+D++TQ + + VAVV+DP +++ GKV + AFR Sbjct: 121 IENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 187
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_CAEEL (COP9 signalosome complex subunit 5 OS=Caenorhabditis elegans GN=csn-5 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.804e-14 Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 3 Query: 12 DMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 206 +M GR E VVGWYHSHPG+GCWLSG+D++TQ + + VA+V+DP++++ GKV I AFR Sbjct: 123 EMCDTEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVIDPLRTMSAGKVDIGAFR 188
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_NEUCR (COP9 signalosome complex subunit 5 OS=Neurospora crassa GN=rri-1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.663e-14 Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = 3 Query: 9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRH-YYSIAINY 344 L + ++ R E V+GWYHSHPG+GCWLSG+D+ TQ + N+ VAVV+DP ++V + KV I AFR I P+ + TT + + ++ F G + H YY++ + + Sbjct: 110 LRLCREENRLENVIGWYHSHPGYGCWLSGIDVGTQSLQQQFNEPFVAVVIDPDRTVSQNKVEIGAFRTI-PEGIKPFAATNTTTGDGQSVPLNKVEDF--GAHSHRYYALDVEH 220
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5A_ARATH (COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.663e-14 Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 3 Query: 21 KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAF-IHGLNRHYYSIAINY 344 K GR E VVGWYHSHPG+GCWLSG+D++TQ+ + + +AVV+DP ++V GKV I AFR + + P + S + I+ F +H + YYS+ + Y Sbjct: 129 KLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTRTVSAGKVEIGAFRTYSKGY----KPPDEPVSEYQTIPLNKIEDFGVH--CKQYYSLDVTY 232
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_DEBHA (COP9 signalosome complex subunit 5 OS=Debaryomyces hansenii GN=RRI1 PE=3 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 4.784e-14 Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 3 Query: 9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFR 206 L+ KQ GR E +VGWYHSHPG+GCWLSG+D+ TQ + +A+V+DP+++ +GKV I AFR Sbjct: 129 LENSKQVGRDENIVGWYHSHPGYGCWLSGIDVATQSLNQNFQDPYLAIVIDPMKTEDQGKVEIGAFR 195
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_CRYNE (COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans GN=RRI1 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14 Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 3 Query: 24 QTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 206 + G+ E++ GWYHSHPG+GCWLSG+D+NTQ + + N +AVV+DP ++V GKV I AFR Sbjct: 122 EAGKGELLRGWYHSHPGYGCWLSGIDVNTQLNNQKFNDPYLAVVIDPNRTVSAGKVEIGAFR 183
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5B_ARATH (COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14 Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 3 Query: 21 KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 206 K GR E VVGWYHSHPG+GCWLSG+D++TQ + + +AVV+DP ++V GKV I AFR Sbjct: 129 KLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFR 191
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_ASPFU (COP9 signalosome complex subunit 5 OS=Aspergillus fumigatus GN=csn5 PE=3 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.818e-13 Identity = 58/214 (27.10%), Postives = 96/214 (44.86%), Query Frame = 3 Query: 9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRH-YYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDE-------LPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL 623 L + GR E VGWYHSHPG+GCWLSG+D+ T Q + L VAVV+DP +++ GKV I AFR P++ + + P +A G H YYS+ +++ W L+ T + ++M++L+ K +A + + P+ + + R D ++ + E V L+++ + L Sbjct: 117 LQSCRDAGRMENAVGWYHSHPGYGCWLSGIDVTT-QDMQQLGGPFVAVVIDPERTISAGKVDIGAFRTFPKDY----TPPKEGNEDEDYQTIPLSKAEDFGAYAHQYYSLEVSFFKSSLDTELLSQLWNKYWVATLSQSPL---FTTRDYGSRQMMDLSQKVRRAARGIESSGSRGGATTPKDQQLEKIVR-DGQRIVSEEVKGLLAAEVKMKL 321 The following BLAST results are available for this feature:
BLAST of FC871921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871921 ID=FC871921; Name=FC871921; organism=Citrus sinensis; type=EST; length=821bpback to top |