FC871921

Overview
NameFC871921
Unique NameFC871921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_XENTR (COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.644e-14
Identity = 63/226 (27.88%), Postives = 105/226 (46.46%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLG-QEPRQTTSNLGHLNKPSIQAF-IHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKA------------VQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDT 641
            ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR     T   G + P +  S    +    I+ F +H   + YY++ + Y                 W + L+      ++   + T  ++ +L+ K  ++            ++  D    +KLA A    +D+ K   E +  LMS  I   L   ++T
Sbjct:  121 IENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR-----TYPKGYKPPDEGPSEYQTIPLNKIEDFGVH--CKQYYALEVTYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNA---DYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSEDKLAKAT---RDSCKTTIEAIHGLMSQVIKDKLFNQINT 333          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_MOUSE (COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.804e-14
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 206
            ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:  121 IENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 187          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_HUMAN (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 2.804e-14
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 206
            ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:  121 IENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 187          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_CAEEL (COP9 signalosome complex subunit 5 OS=Caenorhabditis elegans GN=csn-5 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.804e-14
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 3
Query:   12 DMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 206
            +M    GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  VA+V+DP++++  GKV I AFR
Sbjct:  123 EMCDTEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVIDPLRTMSAGKVDIGAFR 188          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_NEUCR (COP9 signalosome complex subunit 5 OS=Neurospora crassa GN=rri-1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.663e-14
Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRH-YYSIAINY 344
            L + ++  R E V+GWYHSHPG+GCWLSG+D+ TQ   +  N+  VAVV+DP ++V + KV I AFR I P+ +        TT +   +    ++ F  G + H YY++ + +
Sbjct:  110 LRLCREENRLENVIGWYHSHPGYGCWLSGIDVGTQSLQQQFNEPFVAVVIDPDRTVSQNKVEIGAFRTI-PEGIKPFAATNTTTGDGQSVPLNKVEDF--GAHSHRYYALDVEH 220          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5A_ARATH (COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.663e-14
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 3
Query:   21 KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAF-IHGLNRHYYSIAINY 344
            K  GR E VVGWYHSHPG+GCWLSG+D++TQ+  +   +  +AVV+DP ++V  GKV I AFR  +       + P +  S    +    I+ F +H   + YYS+ + Y
Sbjct:  129 KLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTRTVSAGKVEIGAFRTYSKGY----KPPDEPVSEYQTIPLNKIEDFGVH--CKQYYSLDVTY 232          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_DEBHA (COP9 signalosome complex subunit 5 OS=Debaryomyces hansenii GN=RRI1 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.784e-14
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFR 206
            L+  KQ GR E +VGWYHSHPG+GCWLSG+D+ TQ   +      +A+V+DP+++  +GKV I AFR
Sbjct:  129 LENSKQVGRDENIVGWYHSHPGYGCWLSGIDVATQSLNQNFQDPYLAIVIDPMKTEDQGKVEIGAFR 195          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_CRYNE (COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans GN=RRI1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 3
Query:   24 QTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 206
            + G+ E++ GWYHSHPG+GCWLSG+D+NTQ + +  N   +AVV+DP ++V  GKV I AFR
Sbjct:  122 EAGKGELLRGWYHSHPGYGCWLSGIDVNTQLNNQKFNDPYLAVVIDPNRTVSAGKVEIGAFR 183          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5B_ARATH (COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 3
Query:   21 KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 206
            K  GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+DP ++V  GKV I AFR
Sbjct:  129 KLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFR 191          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_ASPFU (COP9 signalosome complex subunit 5 OS=Aspergillus fumigatus GN=csn5 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.818e-13
Identity = 58/214 (27.10%), Postives = 96/214 (44.86%), Query Frame = 3
Query:    9 LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRH-YYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDE-------LPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL 623
            L   +  GR E  VGWYHSHPG+GCWLSG+D+ T Q  + L    VAVV+DP +++  GKV I AFR            P++   +  +   P  +A   G   H YYS+ +++                 W   L+         T +   ++M++L+ K  +A +  +          P+   +  + R D ++ + E V  L+++ +   L
Sbjct:  117 LQSCRDAGRMENAVGWYHSHPGYGCWLSGIDVTT-QDMQQLGGPFVAVVIDPERTISAGKVDIGAFRTFPKDY----TPPKEGNEDEDYQTIPLSKAEDFGAYAHQYYSLEVSFFKSSLDTELLSQLWNKYWVATLSQSPL---FTTRDYGSRQMMDLSQKVRRAARGIESSGSRGGATTPKDQQLEKIVR-DGQRIVSEEVKGLLAAEVKMKL 321          
The following BLAST results are available for this feature:
BLAST of FC871921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CSN5_XENTR1.644e-1427.88COP9 signalosome complex subunit 5 OS=Xenopus trop... [more]
CSN5_MOUSE2.804e-1450.75COP9 signalosome complex subunit 5 OS=Mus musculus... [more]
CSN5_HUMAN2.804e-1450.75COP9 signalosome complex subunit 5 OS=Homo sapiens... [more]
CSN5_CAEEL2.804e-1453.03COP9 signalosome complex subunit 5 OS=Caenorhabdit... [more]
CSN5_NEUCR3.663e-1438.60COP9 signalosome complex subunit 5 OS=Neurospora c... [more]
CSN5A_ARATH3.663e-1440.91COP9 signalosome complex subunit 5a OS=Arabidopsis... [more]
CSN5_DEBHA4.784e-1452.24COP9 signalosome complex subunit 5 OS=Debaryomyces... [more]
CSN5_CRYNE6.248e-1454.84COP9 signalosome complex subunit 5 OS=Cryptococcus... [more]
CSN5B_ARATH6.248e-1457.14COP9 signalosome complex subunit 5b OS=Arabidopsis... [more]
CSN5_ASPFU1.818e-1327.10COP9 signalosome complex subunit 5 OS=Aspergillus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CF11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871921 ID=FC871921; Name=FC871921; organism=Citrus sinensis; type=EST; length=821bp
CTAACATGCTTGACATGCTCAAGCAGACTGGAAGACCAGAAATGGTTGTT
GGATGGTATCACTCACATCCTGGATTTGGTTGCTGGCTCTCTGGTGTTGA
CATAAACACACAGCAGAGTTTTGAAGCTTTGAATCAAAGGGCTGTTGCTG
TGGTTGTGGATCCAATCCAGAGCGTGAAAGGGAAGGTAGTGATTGATGCC
TTCCGCTTGATTAATCCCCAAACCATGATGCTTGGCCAAGAACCACGGCA
GACAACTTCCAATCTTGGTCATCTTAATAAGCCATCCATCCAAGCATTTA
TCCATGGCTTGAATAGACATTATTATTCTATTGCCATCAATTACAGGAAG
AATGAACTTGAAGAAAAGATGCTACTAAATCTGCACAAGAAGAAATGGAC
TGATGGATTAACACTTCATCGCTTTGATTGTCATTCCAAAACCAATGAAC
AGACTGTCCAGGAGATGTTAAATTTGGCTGTCAAATATAACAAGGCAGTT
CAAGAAGAAGACGAGCTGCCGCCAGAGAAGCTGGCCATTGCTAATGTGGG
AAGGCAAGATGCAAAGAAGCACCTTGAGGAACATGTCTCCAACTTGATGT
CCTCAAACATAGTTCAAACTTTGGGAACCATGCTTGATACAGTCATATTC
TAGATGTTGGTTTGTTTTCTGTAGTTTCACTAGCTTCACTCTTGTTTGAC
TATTTGTATGGCATTTACAGTTTGAATTTGTGCTTTATAATTTAACATTT
TAATTCTGAAGGCCTATCCTTTTGTCATGGATGTGCTGGTTTGTNGCTGA
ACGTAGTATATGATTGTGGCT
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