FC871921

Overview
NameFC871921
Unique NameFC871921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9755 contig Csv1_Contig9755:317..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_SCHPO (COP9 signalosome complex subunit 5 OS=Schizosaccharomyces pombe GN=csn5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.625e-12
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 3 
Query:   15 MLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVV-IDAFRLINPQTMMLGQEPRQTTSNLGH-----LNKPSIQAFIHGLNRH-YYSIAINY 344
            + K   R E V+GWYHSHP +GCWLSGVD+ TQ+  +      VAVV+DP +S++   V I AFR     T  +G +    T +  H      N PS +    G +   YYS+ I Y
Sbjct:  103 LCKSVYRHENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRSLESPYVNIGAFR-----TYPVGNDGSIRTKSRHHPSVLFKNLPSSKIEDAGAHAEAYYSLPITY 214
[Close]
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: CSN5_CANAL (COP9 signalosome complex subunit 5 OS=Candida albicans GN=RRI1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.637e-12
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:   39 EMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLIN 215
            E +VGWYH HP +GCWL G+D++TQ   + L    +A+VVDP++++K GKV I AFR ++
Sbjct:  154 ENIVGWYHRHPRYGCWLKGIDVSTQSLNQGLQDPYLAIVVDPVKTLKQGKVEIGAFRNVS 213
The following BLAST results are available for this feature:
BLAST of FC871921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CSN5_SCHPO2.625e-1239.32COP9 signalosome complex subunit 5 OS=Schizosaccha... [more]
CSN5_CANAL7.637e-1250.00COP9 signalosome complex subunit 5 OS=Candida albi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CF11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871921 ID=FC871921; Name=FC871921; organism=Citrus sinensis; type=EST; length=821bp
CTAACATGCTTGACATGCTCAAGCAGACTGGAAGACCAGAAATGGTTGTT
GGATGGTATCACTCACATCCTGGATTTGGTTGCTGGCTCTCTGGTGTTGA
CATAAACACACAGCAGAGTTTTGAAGCTTTGAATCAAAGGGCTGTTGCTG
TGGTTGTGGATCCAATCCAGAGCGTGAAAGGGAAGGTAGTGATTGATGCC
TTCCGCTTGATTAATCCCCAAACCATGATGCTTGGCCAAGAACCACGGCA
GACAACTTCCAATCTTGGTCATCTTAATAAGCCATCCATCCAAGCATTTA
TCCATGGCTTGAATAGACATTATTATTCTATTGCCATCAATTACAGGAAG
AATGAACTTGAAGAAAAGATGCTACTAAATCTGCACAAGAAGAAATGGAC
TGATGGATTAACACTTCATCGCTTTGATTGTCATTCCAAAACCAATGAAC
AGACTGTCCAGGAGATGTTAAATTTGGCTGTCAAATATAACAAGGCAGTT
CAAGAAGAAGACGAGCTGCCGCCAGAGAAGCTGGCCATTGCTAATGTGGG
AAGGCAAGATGCAAAGAAGCACCTTGAGGAACATGTCTCCAACTTGATGT
CCTCAAACATAGTTCAAACTTTGGGAACCATGCTTGATACAGTCATATTC
TAGATGTTGGTTTGTTTTCTGTAGTTTCACTAGCTTCACTCTTGTTTGAC
TATTTGTATGGCATTTACAGTTTGAATTTGTGCTTTATAATTTAACATTT
TAATTCTGAAGGCCTATCCTTTTGTCATGGATGTGCTGGTTTGTNGCTGA
ACGTAGTATATGATTGTGGCT
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