DY306161

Overview
NameDY306161
Unique NameDY306161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: DPOE3_BOVIN (DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 38/100 (38.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  286 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKY-TEKEGEK 582
            ++ R +D  LP A ++RI+K+ALP    ISK+A+  +    S F+ + T  A++   + KRKT+N  D+L AM  + F+ +V PLK  L+ Y  E++G+K
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKK 100          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: DPOE3_MOUSE (DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 36/99 (36.36%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  286 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYTEKEGEK 582
            ++ R +D  LP A ++RI+K+ALP    ISK+A+  +    S F+ + T  A++   + KRKT+N  D+L AM  + F+ ++ PLK  L+ Y   E  K
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGK 99          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NC2B_RAT (Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 37/109 (33.94%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  289 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQ--KYTEKEGEKTSMGMENDG 609
            S  + D  +P A +++++K+ LP N +++ DA+E V  C +EFI  I+ EA++ C + ++KTI+ + ++ A+ +LGF  Y+  +K  LQ  K    +  K S  +EN G
Sbjct:    5 SGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLG 112          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NC2B_MOUSE (Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 37/109 (33.94%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  289 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQ--KYTEKEGEKTSMGMENDG 609
            S  + D  +P A +++++K+ LP N +++ DA+E V  C +EFI  I+ EA++ C + ++KTI+ + ++ A+ +LGF  Y+  +K  LQ  K    +  K S  +EN G
Sbjct:    5 SGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLG 112          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NC2B_HUMAN (Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 37/109 (33.94%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  289 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQ--KYTEKEGEKTSMGMENDG 609
            S  + D  +P A +++++K+ LP N +++ DA+E V  C +EFI  I+ EA++ C + ++KTI+ + ++ A+ +LGF  Y+  +K  LQ  K    +  K S  +EN G
Sbjct:    5 SGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLG 112          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NC2B_DICDI (Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 37/107 (34.58%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  295 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYTEKEG--EKTSMGMENDG 609
            +E +  LP A VS+++K+ LP + K S + ++ + EC  EFI  I+ EA+D C RE+++TI  + ++ A+T LGF +Y + +     K+  +     K+S   EN G
Sbjct:    7 KEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTIAAEHVIKALTELGFSDYTQKVSDVYDKHKLEVSTKSKSSKKFENLG 113          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NC2B_CHICK (Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 37/109 (33.94%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  289 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQ--KYTEKEGEKTSMGMENDG 609
            S  + D  +P A +++++K+ LP N +++ DA+E V  C +EFI  I+ EA++ C + ++KTI+ + ++ A+ +LGF  Y+  +K  LQ  K    +  K S  +EN G
Sbjct:    5 SGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLG 112          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NC2B_ARATH (Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 31/105 (29.52%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  298 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYTEKEGEKTSMGMENDGG 612
            ++D  LP A +++I+K+ LP + ++++DA++ + EC  EFI+ ++ E++D C +E ++TI  + +L A+  LGF EY+E +    +++  +  + T   ++ + G
Sbjct:   11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPG 115          
The following BLAST results are available for this feature:
BLAST of DY306161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DPOE3_BOVIN1.943e-1238.00DNA polymerase epsilon subunit 3 OS=Bos taurus GN=... [more]
DPOE3_MOUSE4.329e-1236.36DNA polymerase epsilon subunit 3 OS=Mus musculus G... [more]
NC2B_RAT5.654e-1233.94Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1[more]
NC2B_MOUSE5.654e-1233.94Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1[more]
NC2B_HUMAN5.654e-1233.94Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1[more]
NC2B_DICDI5.654e-1234.58Protein Dr1 homolog OS=Dictyostelium discoideum GN... [more]
NC2B_CHICK5.654e-1233.94Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1[more]
NC2B_ARATH9.645e-1229.52Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3DC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306161 ID=DY306161; Name=DY306161; organism=Citrus sinensis; type=EST; length=689bp
GTCCCTTTCCGCAAGGAGAAGAGGAAAAAAAAAAAAAAGGCCACCACCTT
CAGCCTTCAGGCTTCATCCTGCCTAGCATACCATCAACTTCCCATTTTAC
CCCTCTTGTTTTCTCATAATTCTCAATTCCCCACTCTCCTGAAAAATCCA
GTCTTTATTATCTGACAAAATCAAAATTCGATCTTTCGATCTGGGTATTT
TGAGAATTTTTTCTTTTTAAATATTGTGATGGCTGATTCGGACAACGATT
CTGGGGGGCAAAACAACAGCAACGCAAACAGCGAGCTGTCGGCGAGAGAA
CAGGATAGGTTCTTGCCGATAGCTAATGTAAGCAGGATAATGAAGAAGGC
TTTGCCAGCGAATGCGAAGATATCAAAGGACGCTAAAGAGACAGTGCAAG
AGTGTGTGTCGGAGTTTATAAGTTTCATAACTGGCGAAGCTTCTGACAAG
TGTCAGCGCGAGAAGCGGAAGACGATCAACGGTGATGATTTGTTGTGGGC
CATGACGACTTTAGGCTTCGAAGAGTACGTGGAACCCTTGAAGGTCTATT
TGCAAAAGTATACGGAGAAGGAGGGAGAGAAGACTTCCATGGGGATGGAG
AACGACGGCGGTGTTATCTGAAGCCGCCCTTAACTATTCGTGACGGGTCG
GATGCGGGGATTGTCGCCATGCTGGTGGAGGAGTCAGTG
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