EY665753

Overview
NameEY665753
Unique NameEY665753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPA_ECO57 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O157:H7 GN=clpA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.536e-26
Identity = 61/145 (42.07%), Postives = 94/145 (64.83%), Query Frame = 1
Query:    1 LARGELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEE---ARELEKELRQITKEKNEAVRGQDFEKAGELRDR 426
            L+ G++  IG+TT  E+    EKD AL RRFQ + + EPS++ET+QI+ GL+ +YE HH +RYT +A+ +A +L+ +YI+DR LPDKAID+IDEAG+R RL      ++     ++E  + +I +   ++V   D +    L DR
Sbjct:  311 LSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDR 455          
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPB_YEREN (Chaperone protein clpB OS=Yersinia enterocolitica GN=clpB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.422e-26
Identity = 71/167 (42.51%), Postives = 99/167 (59.28%), Query Frame = 1
Query:    1 LARGELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLK-AQISALVDKGKEMSKAETE 498
            LARG+L  IGATT  E+++HIEKDPAL RRFQ ++V EP  D  I +L+GL    E HH +   DEAL +A +LS++YI  R LPDKAI L+D A +RV +     P E ++L  +      E +   + Q F K  + R   ++   AQ SA  +K ++  +AE E
Sbjct:  332 LARGQLRTIGATTWSEFKRHIEKDPALTRRFQVLQVDEPDEDTAISMLRGLTPALEKHHGVWIMDEALQAAVRLSHRYIPARQLPDKAISLLDTACARVAVAQFSQPAELQQLTFQSETAQTELSSLEKAQHFGKGQDERTALLEATIAQHSAAANKLEQRWQAERE 498          
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPV1_PSEAE (Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.590e-23
Identity = 71/192 (36.98%), Postives = 104/192 (54.17%), Query Frame = 1
Query:    1 LARGELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARE-------LEKELRQITKE------------KNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPV 519
            LARG L  + ATT  EY+KHIEKDPAL RRFQ V+V EPS  + I +++G+    E HH+++  DEAL +A +LS++YI  R LPDK++ L+D A +R  +    +P E  +       LE EL  I +E              E +  ++ E+   L  R  + K  +  L++    + +A  EA D G V
Sbjct:  334 LARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVDEPSEHKAILMMRGVASTMEKHHQVQILDEALEAAVRLSHRYIPARQLPDKSVSLLDTACARTAISLHAVPAEVDDSRRRIEALETELAIIRRESAIGVATAERQRNAETLLAEERERLAALEQRWAEEKRLVDELLETRARL-RAAAEAVDAGGV 524          
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPL_LACLA (ATP-dependent Clp protease ATP-binding subunit clpL OS=Lactococcus lactis subsp. lactis GN=clpL PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.998e-22
Identity = 82/257 (31.91%), Postives = 125/257 (48.64%), Query Frame = 1
Query:   13 ELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQPFVSAWTGLSG*KKPQLMNLIAFLKMKKTLSQKSYWVGMKLAKVLNRAFRGDRVGTQKPPFNQFGNFLFFRAPWGGRKTEL 783
            +L  IGATT DEYR  I K+ AL RRF  V + EP+  +T++IL+G++E YE HH +   D+   +A   S +YI +R LPDKAIDLID+ GS           +   L++ L+   + +  A++ +DF KA +++  +   K +I     K  +  K      DV   V  +   P     + +       L NL   LK+      ++        K++ +A R +R G  +      G+FLF   P G  KTEL
Sbjct:  284 KLSVIGATTQDEYRNTILKNAALARRFNDVVINEPTAADTLRILQGIKELYEKHHHVVLPDDEKKAAVDYSIKYIHNRHLPDKAIDLIDDCGS---FSGKNSQTDVETLDQRLKNKRQLRRPAIKSEDFAKAADIKRVDRGTKQKIK----KTHQKEKITATIDDVAQSVERLTGIPV----SDMGANDIEHLKNLDKRLKVMVIGEDEA-------VKMVAKAIRRNRAGFSEGD-QPKGSFLFV-GPTGVGKTEL 520          
The following BLAST results are available for this feature:
BLAST of EY665753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPA_ECO571.536e-2642.07ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_YEREN3.422e-2642.51Chaperone protein clpB OS=Yersinia enterocolitica ... [more]
CLPV1_PSEAE1.590e-2336.98Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 P... [more]
CLPL_LACLA2.998e-2231.91ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665753 ID=EY665753; Name=EY665753; organism=Citrus sinensis; type=EST; length=859bp
CTTGCCCGAGGAGAGTTACCGTGTATTGGTGCCACAACACTAGATGAATA
TAGAAAGCACATTGAGAAAGATCCAGCATTAGAAAGACGATTCCAGCCAG
TTAAAGTGCCAGAACCGTCAGTGGATGAAACCATACAAATTTTGAAAGGG
CTTCGAGAGCGATATGAAATTCACCACAAGCTTCGTTACACTGATGAAGC
ACTAGTTTCTGCTGCTCAGTTGTCATACCAGTACATCAGTGACCGTTTTC
TCCCTGATAAAGCTATTGATTTGATTGATGAAGCTGGTTCTCGGGTTCGT
CTTCGTCATGCACAGCTCCCCGAGGAAGCTAGAGAGCTTGAAAAAGAGCT
CAGGCAGATAACTAAGGAGAAGAATGAGGCTGTTCGTGGCCAAGACTTTG
AAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCAGATA
TCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTGAAGC
AGGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACCCTTTGTCT
CCGCTTGGACGGGGCTTTCCGGGTGAAAAAAGCCTCAACTGATGAATCTG
ATCGCCTTCCTCAAAATGAAGAAAACCCTTTCCCAAAAAAGTTATTGGGT
CGGGATGAAGCTGGCCAAAGTATTAAACCGGGCATTCCGGGGGGACCGGG
TTGGAACTCAAAAACCCCCATTCAACCAATTTGGGAATTTTCTTTTTTTT
CGGGCCCCATGGGGGGGCCGGAAAACTGAACTTGGGCCAAAACCCGGGGG
GCTTATTATTTTTGGTTTTAAAGAGGGGCCCACGAAAACGGTTTGAAAAA
TAAAAGGAT
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