EY665753

Overview
NameEY665753
Unique NameEY665753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.102e-40
Identity = 132/317 (41.64%), Postives = 168/317 (53.00%), Query Frame = 1
Query:    1 LARGELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQ-------ITKEKNEAVRGQ--DFEKAGELRDREM-DL----KAQISALVDKGK-----EMSKAETEAGD------------------------------------VGPVVTEVDIQPFVSAWTGLSG*KKPQLMNLIAFLKMKKTLSQKSYWVGMKLA-KVLNRAFRGDRVGTQKPPFNQFGNFLFFRAPWGGRKTEL 783
            LARGEL CIGATTLDEYRK+IEKD ALERRFQ V V EP+V++TI IL+GL+ERY +HH +  TD A+V+AA LS +YI+DR LPDKAIDL+DEA SR+R+     PEE   LE+ L Q       + KEK+EA R +  D E   +  +RE  DL    K++ +AL    K     E +K E EA                                      V   VT  +I   VS WTG+   K  +       L+M+  L ++   VG + A KV++ A R  R G   P     G+FLF   P G  KTEL
Sbjct:  303 LARGELHCIGATTLDEYRKYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKERYAVHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERRLIQLKIQREMLKKEKDEASRQRLADLESDIDKLEREFSDLNEVWKSEKAALQGTTKIKEQIEHAKLELEAAQRRQDYAKMSEIQYGVLPQLEKQMLLANEVEHHDFKLVQDRVTAEEIAEVVSRWTGIPVNKMLE-GERDKLLRMEDELHRRV--VGQEEAIKVVSDAVRRSRAGLSDPN-RPSGSFLFL-GPTGVGKTEL 614          
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPB_HAEDU (Chaperone protein clpB OS=Haemophilus ducreyi GN=clpB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.102e-40
Identity = 99/175 (56.57%), Postives = 124/175 (70.86%), Query Frame = 1
Query:    1 LARGELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQ-------ITKEKNEAVRGQDFEKAGELRDREMDLKAQ-ISALVDKGKEMSKAETEA 501
            LARGEL C+GATTLDEYR++IEKD ALERRFQ V V EPSV++TI IL+GL+ERYEIHH ++ TD A+V+AA LS++YISDR LPDKAIDLIDEA S +R+     PE   +LE+ + Q       + KEK+EA R    ++  +L D EM  KAQ  SAL    +E+ KAE  A
Sbjct:  301 LARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASSLRMEIDSKPEPLDKLERRIIQLKLERQALQKEKDEASR----QRLAKL-DEEMTAKAQEYSAL----EEVWKAEKSA 466          
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 7.102e-40
Identity = 82/146 (56.16%), Postives = 108/146 (73.97%), Query Frame = 1
Query:    1 LARGELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDL 438
            LARGEL CIGATTLDEYRK+IEKD ALERRFQ V V +PSV++TI IL+GL+ERYE+HH ++ +D +LV+AA LS +YISDRFLPDKAIDL+DEA +R+++     PEE  E+++++ Q+  EK    +  D      L   E +L
Sbjct:  305 LARGELRCIGATTLDEYRKYIEKDAALERRFQQVYVDQPSVEDTISILRGLKERYEVHHGVKISDSSLVAAATLSSRYISDRFLPDKAIDLVDEAAARLKMEITSKPEELDEIDRKILQLEMEKLSLQKESDAASRERLERLEKEL 450          
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPE_STRPN (ATP-dependent Clp protease ATP-binding subunit clpE OS=Streptococcus pneumoniae GN=clpE PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.211e-39
Identity = 118/278 (42.45%), Postives = 163/278 (58.63%), Query Frame = 1
Query:    1 LARGELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQPFVSAWTG-----LSG*KKPQLMNLIAFLKMKKTLSQKSYWVGMKLA-KVLNRAFRGDRVGTQKPPFNQFGNFLFFRAPWGGRKTELGPKPGGLIIFG 816
            LARGEL  +GATTL+EYR  IEKD ALERR QPVKV EP+VDETI ILKG++++YE +H ++YTD A+ +AA LS +YI DRFLPDKAIDL+DEAGS++ L    +  + + +++ L +    K++A R +DFEKA   RD+           + K KEM K +    D  P ++E  I+  +   T      L   ++ QL++L   L        KS+ +G   A   + +A R +RVG   P     G+FLF   P G  KTEL  K   + +FG
Sbjct:  255 LARGELQLVGATTLNEYRI-IEKDAALERRMQPVKVDEPTVDETITILKGIQKKYEDYHHVQYTDAAIEAAATLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFV--DPKVIDQRLIEAENLKSQATREEDFEKAAYFRDQ-----------IAKYKEMQKKKITDQDT-PSISEKTIEHIIEQKTNIPVGDLKEKEQSQLIHLAEDL--------KSHVIGQDDAVDKIAKAIRRNRVGLGTPN-RPIGSFLFV-GPTGVGKTELS-KQLAIELFG 506          
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.211e-39
Identity = 121/321 (37.69%), Postives = 169/321 (52.65%), Query Frame = 1
Query:    1 LARGELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI-------------TKEKNEAVRGQDF-EKAGELRDREMDLKAQISAL-----VDKGKEMSKAETE----AGDVGPV--------------------------------VTEVDIQPFVSAWTGLSG*K-----KPQLMNLIAFLKMKKTLSQKSYWVGMKLAKVLNRAFRGDRVGTQKPPFNQFGNFLFFRAPWGGRKTEL 783
            LARGEL C+GATTLDEYR++IEKDPALERRFQ V V EP+V++TI IL+GL+ERYE+HH +  TD A+V+AA LS++YISDR LPDKAIDLIDEA S +R++    PE   +LE+++ Q+               EK  A+  ++  EK  +  + E   KA+ +AL     +    E ++ + E    AGD+  +                                VT+ +I   +S  TG+   K     K +L+ +   L  K+ + QK      +  +V+  A R  R G   P     G+FLF   P G  KTEL
Sbjct:  303 LARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHIKAALEQARMDLEVARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQEMTLLRNKVTDAEIAEVLSKQTGIPVSKMLEAEKEKLLRMEDVLH-KRVIGQK------EAVEVVANAIRRSRAGLSDPN-RPIGSFLFL-GPTGVGKTEL 614          
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.211e-39
Identity = 113/325 (34.77%), Postives = 171/325 (52.62%), Query Frame = 1
Query:    1 LARGELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF----------EKAGELRDREMDLKAQISA---LVDK---------------------------------------------GKEMSKAETEAGD-VGPVVTEVDIQPFVSAWTG-----LSG*KKPQLMNLIAFLKMKKTLSQKSYWVGMKLAKVLNRAFRGDRVGTQKPPFNQFGNFLFFRAPWGGRKTEL 783
            LARGEL CIGATTLDEYRK+IEKD ALERRFQ V V +P+V++TI IL+GL+ERYE+HH +R +D ALV+AA LS++YISDRFLPDKAIDL+DEA +++++     PE   E+++++ Q+  E+    +  D           ++  +L++ +  L AQ  A   ++D+                                              K++S+ +T     +   VTE DI   +S WTG     L   ++ +L++L   L  K+ + Q+      +  ++++ A +  R G   P      +F+F   P G  KTEL
Sbjct:  306 LARGELRCIGATTLDEYRKYIEKDAALERRFQQVYVDQPTVEDTISILRGLKERYEVHHGVRISDSALVAAAVLSHRYISDRFLPDKAIDLMDEAAAKLKMEITSKPEALDEVDRKILQLEMERLSLAKESDAASRDRLERLEKELADLKEEQRSLNAQWQAEKDIIDQVQAVKEEIDQVNVQIQQAERDYDLNRAAELKYGKLSELQKRLDAADKQLSETQTSGRSLLREEVTEEDIAEIISKWTGIPVSKLVASEREKLLHLEDELH-KRVVGQE------EAVRIVSEAIQRSRAGLADPN-RPIASFIFL-GPTGVGKTEL 621          
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPB2_THEEB (Chaperone protein clpB 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.211e-39
Identity = 87/164 (53.05%), Postives = 114/164 (69.51%), Query Frame = 1
Query:    1 LARGELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKE----KNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEM 480
            LARGEL CIGATTLDEYRK+IEKD ALERRFQ V + +PSV++TI IL+GL++RYEIHH ++ TD ALV+AA LS +YISDR+LPDKAIDL+DEA +++++     P E   LE+ LRQ+  E    K E             RDR   ++A+I+ L  + + M
Sbjct:  305 LARGELRCIGATTLDEYRKYIEKDAALERRFQQVYIGQPSVEDTISILRGLKDRYEIHHNVKITDSALVAAAMLSDRYISDRYLPDKAIDLVDEAAAKLKMEITTKPAELEALERRLRQLEMERLSLKQEESLPLSQAPLQATRDRLQRIEAEIAQLQPRQQAM 468          
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 1.211e-39
Identity = 86/182 (47.25%), Postives = 123/182 (67.58%), Query Frame = 1
Query:    1 LARGELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF---EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDI 537
            LARGEL CIGATTLDEYR++IEKD ALERRFQ V V +P+V++TI IL+GL+ERYE+HH +R +D ALV+AA LS +YISDRFLPDKAIDL+DE+ +R+++     PEE  E+++++ Q+  E+    +  D    E+   L     DLK +  +L  + +      T+   V   + +V++
Sbjct:  305 LARGELRCIGATTLDEYRQYIEKDAALERRFQQVFVDQPTVEDTISILRGLKERYEVHHGVRISDNALVAAAVLSTRYISDRFLPDKAIDLVDESAARLKMEITSKPEELDEIDRKILQLEMERLSLQKESDLASQERLQRLEKELADLKEEQRSLSSQWQAEKDVITDIQSVKEEIDQVNL 486          
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.582e-39
Identity = 88/176 (50.00%), Postives = 119/176 (67.61%), Query Frame = 1
Query:    1 LARGELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF---EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPV 519
            LARGEL CIGATTLDEYRK+IEKDPALERRFQPV V EP++++ I IL+GL+ER+E+HH +R +D A+V A  LS++YI+DR LPDKAIDLIDEA + +R     LP +  E  +++ Q+  E+    R  D    E+   L +   DL+A+ +AL      +S+ E E G +  V
Sbjct:  308 LARGELHCIGATTLDEYRKYIEKDPALERRFQPVLVDEPTIEDAISILRGLKERFEVHHGVRISDSAIVEAVTLSHRYITDRQLPDKAIDLIDEAAALIRTEIDSLPADLDEANRKIMQLEIEREALRRETDVASRERLERLENELADLRAEQTAL------LSQWEREKGSIDHV 477          
BLAST of EY665753 vs. ExPASy Swiss-Prot
Match: CLPB_NITEU (Chaperone protein clpB OS=Nitrosomonas europaea GN=clpB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.066e-39
Identity = 88/174 (50.57%), Postives = 123/174 (70.69%), Query Frame = 1
Query:    1 LARGELPCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVV 522
            LARGEL C+GATTLDEYRK++EKD ALERRFQ V V EP V+ TI IL+GL+E+YE+HH +  TD A+V+AA+LS++YI+DRFLPDKAIDLIDEA +R+R+     PE   +L++ L Q+ K + EAVR          ++++   K +++ L +   E+SK E E  D+  ++
Sbjct:  303 LARGELHCVGATTLDEYRKYVEKDAALERRFQKVLVDEPGVEATIAILRGLQEKYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAAARIRMEQDSKPEVMDKLDRRLIQL-KIEREAVR----------KEKDDASKKRLALLEE---EISKLEREYADLDEIL 462          
The following BLAST results are available for this feature:
BLAST of EY665753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_XANCP7.102e-4041.64Chaperone protein clpB OS=Xanthomonas campestris p... [more]
CLPB_HAEDU7.102e-4056.57Chaperone protein clpB OS=Haemophilus ducreyi GN=c... [more]
CLPB2_ANASP7.102e-4056.16Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPE_STRPN1.211e-3942.45ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_VIBCH1.211e-3937.69Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB_GLOVI1.211e-3934.77Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB2_THEEB1.211e-3953.05Chaperone protein clpB 2 OS=Thermosynechococcus el... [more]
CLPB1_SYNE71.211e-3947.25Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPB_DESVH1.582e-3950.00Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
CLPB_NITEU2.066e-3950.57Chaperone protein clpB OS=Nitrosomonas europaea GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665753 ID=EY665753; Name=EY665753; organism=Citrus sinensis; type=EST; length=859bp
CTTGCCCGAGGAGAGTTACCGTGTATTGGTGCCACAACACTAGATGAATA
TAGAAAGCACATTGAGAAAGATCCAGCATTAGAAAGACGATTCCAGCCAG
TTAAAGTGCCAGAACCGTCAGTGGATGAAACCATACAAATTTTGAAAGGG
CTTCGAGAGCGATATGAAATTCACCACAAGCTTCGTTACACTGATGAAGC
ACTAGTTTCTGCTGCTCAGTTGTCATACCAGTACATCAGTGACCGTTTTC
TCCCTGATAAAGCTATTGATTTGATTGATGAAGCTGGTTCTCGGGTTCGT
CTTCGTCATGCACAGCTCCCCGAGGAAGCTAGAGAGCTTGAAAAAGAGCT
CAGGCAGATAACTAAGGAGAAGAATGAGGCTGTTCGTGGCCAAGACTTTG
AAAAGGCTGGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCAGATA
TCTGCTCTTGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTGAAGC
AGGGGATGTTGGTCCTGTTGTGACTGAAGTGGACATTCAACCCTTTGTCT
CCGCTTGGACGGGGCTTTCCGGGTGAAAAAAGCCTCAACTGATGAATCTG
ATCGCCTTCCTCAAAATGAAGAAAACCCTTTCCCAAAAAAGTTATTGGGT
CGGGATGAAGCTGGCCAAAGTATTAAACCGGGCATTCCGGGGGGACCGGG
TTGGAACTCAAAAACCCCCATTCAACCAATTTGGGAATTTTCTTTTTTTT
CGGGCCCCATGGGGGGGCCGGAAAACTGAACTTGGGCCAAAACCCGGGGG
GCTTATTATTTTTGGTTTTAAAGAGGGGCCCACGAAAACGGTTTGAAAAA
TAAAAGGAT
back to top