CN186363

Overview
NameCN186363
Unique NameCN186363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CORDI (Elongation factor Tu OS=Corynebacterium diphtheriae GN=tuf PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.239e-27
Identity = 81/243 (33.33%), Postives = 127/243 (52.26%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+TTT  +   L      + E F  +A             +DK   E+ERGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L +  Y+ E+ P + IS  +     E+ T        +++D +    D+I +P+R +DKP  +P++D+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTTTAAITKVLADAYPELNEAFAFDA-------------IDKAPEEKERGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVD---DEEIIELVEMEIRELLAEQDYD-EEAPIIHISALKALEGDEKWTQ-------SIIDLMQACDDSIPDPERETDKPFLMPIEDI 219          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU2_PELTS (Elongation factor Tu 2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.239e-27
Identity = 80/241 (33.20%), Postives = 121/241 (50.21%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP-TLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +   L  + K  +++++K               +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           D  V+E+ S  +  G   +++P +  S  +           +W K    L+DA+D  I  P+R  DKP  +P++DV
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITMVLATVGKAQVKKYDK---------------IDNAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKADMVDDPELLELVDMEVRELLSTYEFPG---DEIPIITGSALKAMECACGKRECEWCKSIWELMDAVDEYIPTPQRAVDKPFLMPVEDV 223          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_LACS1 (Elongation factor Tu OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=tuf PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.618e-27
Identity = 87/243 (35.80%), Postives = 124/243 (51.03%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T         I K + E+   EA++       YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D           D +  EV   L +  +  + +P +    +   EGD   E            L+D +D  I  P+RP+DKP  +P++DV
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLAEKGLAEASD-------YASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVEYIVVFLNKCDLVD---DDELLDLVEMEVRDLLSEYDFPGDDIPVIRGSALKALEGDKDAEAQI-------MELMDTVDEYIPTPQRPTDKPFLMPVEDV 218          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_STRTD (Elongation factor Tu OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.114e-27
Identity = 88/243 (36.21%), Postives = 127/243 (52.26%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +          V+ R    A    K    YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E    +D      L++ +D  I EP+R +DKPL LP++DV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSAVNTPK---DYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDIPVIQGSALKALEGDSKYE-DIIMD------LMNTVDEYIPEPERDTDKPLLLPVEDV 221          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_STRT2 (Elongation factor Tu OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.114e-27
Identity = 88/243 (36.21%), Postives = 127/243 (52.26%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +          V+ R    A    K    YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E    +D      L++ +D  I EP+R +DKPL LP++DV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSAVNTPK---DYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDIPVIQGSALKALEGDSKYE-DIIMD------LMNTVDEYIPEPERDTDKPLLLPVEDV 221          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_STRT1 (Elongation factor Tu OS=Streptococcus thermophilus (strain CNRZ 1066) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.114e-27
Identity = 88/243 (36.21%), Postives = 127/243 (52.26%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +          V+ R    A    K    YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E    +D      L++ +D  I EP+R +DKPL LP++DV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSAVNTPK---DYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDIPVIQGSALKALEGDSKYE-DIIMD------LMNTVDEYIPEPERDTDKPLLLPVEDV 221          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_DESHY (Elongation factor Tu OS=Desulfitobacterium hafniense (strain Y51) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.114e-27
Identity = 78/241 (32.37%), Postives = 122/241 (50.62%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+N+  IGHVD GK+T+T  +   L      V + F++               +DK   ERERGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  E+   L +  +  + +P +P SG +       S + +W  K   L+DA+D+ I  P+R +DKP  +P++DV
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTSTAAITLVLSKAGGAVAQAFDQ---------------IDKAPEERERGITISTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVWLNKADMVD---DPELMELVEMEIRELLSEYEFPGDDIPIIPGSGLKALQCGCGSRDCEWCGKIWNLMDAVDSYIPTPERATDKPFLMPVEDV 223          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_DESHD (Elongation factor Tu OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.114e-27
Identity = 78/241 (32.37%), Postives = 122/241 (50.62%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+N+  IGHVD GK+T+T  +   L      V + F++               +DK   ERERGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  E+   L +  +  + +P +P SG +       S + +W  K   L+DA+D+ I  P+R +DKP  +P++DV
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTSTAAITLVLSKAGGAVAQAFDQ---------------IDKAPEERERGITISTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVWLNKADMVD---DPELMELVEMEIRELLSEYEFPGDDIPIIPGSGLKALQCGCGSRDCEWCGKIWNLMDAVDSYIPTPERATDKPFLMPVEDV 223          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_PELLD (Elongation factor Tu OS=Pelodictyon luteolum (strain DSM 273) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.761e-27
Identity = 87/243 (35.80%), Postives = 125/243 (51.44%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            ++K H+NI  IGHVD GK+T T  +   L           +K  AE   R+F     +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L + G+  + +P +    +   EGD   E++          L+DA+DN I EP R  DKP  +P++DV
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITSVLS----------KKGFAE--SRAFGD---IDKAPEERERGITISTAHVEYQTEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVFLNKVDIADPEL----LELVEMELRELLTEYGFPGDDIPIIKGSALKALEGDPEGEKAI-------LELMDAVDNYIPEPVRDVDKPFLMPVEDV 217          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CLAMS (Elongation factor Tu OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.761e-27
Identity = 86/244 (35.25%), Postives = 128/244 (52.46%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGD-NMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T         I K + +++   +A   +R F     +D    ER+RGITI+I+  ++ET K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ +  P V +SG    EGD   +E+           L++A+D +I EP R  DKP  +P++DV
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AISKVLADKYP--SATNVQRDFAS---IDSAPEERQRGITINISHVEYETPKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLAKQVGVPYLLVALNKSDMVD---DEEILELVELEVRELLSSQDFDGDNAPVVQVSGLKALEGDEKWVEQIVK--------LMEAVDESIPEPVRDKDKPFLMPVEDV 221          
The following BLAST results are available for this feature:
BLAST of CN186363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CORDI1.239e-2733.33Elongation factor Tu OS=Corynebacterium diphtheria... [more]
EFTU2_PELTS1.239e-2733.20Elongation factor Tu 2 OS=Pelotomaculum thermoprop... [more]
EFTU_LACS11.618e-2735.80Elongation factor Tu OS=Lactobacillus salivarius s... [more]
EFTU_STRTD2.114e-2736.21Elongation factor Tu OS=Streptococcus thermophilus... [more]
EFTU_STRT22.114e-2736.21Elongation factor Tu OS=Streptococcus thermophilus... [more]
EFTU_STRT12.114e-2736.21Elongation factor Tu OS=Streptococcus thermophilus... [more]
EFTU_DESHY2.114e-2732.37Elongation factor Tu OS=Desulfitobacterium hafnien... [more]
EFTU_DESHD2.114e-2732.37Elongation factor Tu OS=Desulfitobacterium hafnien... [more]
EFTU_PELLD2.761e-2735.80Elongation factor Tu OS=Pelodictyon luteolum (stra... [more]
EFTU_CLAMS2.761e-2735.25Elongation factor Tu OS=Clavibacter michiganensis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186363 ID=CN186363; Name=CN186363; organism=Citrus sinensis; type=EST; length=802bp
GCGGTTTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGG
TTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTG
GGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATA
TTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGAT
GCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACA
GGCTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAG
CTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTC
ACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCAC
CACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCT
CTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTG
CCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCT
TGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATG
AGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTG
TA
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