CN186363

Overview
NameCN186363
Unique NameCN186363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_EHRRW (Elongation factor Tu OS=Ehrlichia ruminantium (strain Welgevonden) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.606e-27
Identity = 84/238 (35.29%), Postives = 118/238 (49.58%), Query Frame = 3
Query:   90 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALDNINEPKRPSDKPLRLPLQDV 800
            K HIN+  IGHVD GK+T T  L   L            K  +    +S KY  + DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK D       +     +  E+   L K GY  + +  V  S  +   + E S +  W  K   L++AL+ I+ P R  DKP  + ++DV
Sbjct:    6 KPHINVGTIGHVDHGKTTLTAALTTVLA-----------KRLSGEGNKSVKYDEI-DKAPEEKARGITISTAHVEYETENRHYAHVDCPGHADYIKNMITGAAQMDAAILVVSATDGAMP-------QTREHILLAKQVGVKDIVVWMNKCDVVD---DEEMLSLVEMEIRELLTKYGYPGDDIDVVKGSAVKA--LEEESADGVWSEKIMELMNALEKIDLPIREKDKPFLMSIEDV 219          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_EHRRG (Elongation factor Tu OS=Ehrlichia ruminantium (strain Gardel) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.606e-27
Identity = 84/238 (35.29%), Postives = 118/238 (49.58%), Query Frame = 3
Query:   90 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALDNINEPKRPSDKPLRLPLQDV 800
            K HIN+  IGHVD GK+T T  L   L            K  +    +S KY  + DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK D       +     +  E+   L K GY  + +  V  S  +   + E S +  W  K   L++AL+ I+ P R  DKP  + ++DV
Sbjct:    6 KPHINVGTIGHVDHGKTTLTAALTTVLA-----------KRLSGEGNKSVKYDEI-DKAPEEKARGITISTAHVEYETENRHYAHVDCPGHADYIKNMITGAAQMDAAILVVSATDGAMP-------QTREHILLAKQVGVKDIVVWMNKCDVVD---DEEMLSLVEMEIRELLTKYGYPGDDIDVVKGSAVKA--LEEESADGVWSEKIMELMNALEKIDLPIREKDKPFLMSIEDV 219          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CHLTE (Elongation factor Tu OS=Chlorobium tepidum GN=tuf PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.606e-27
Identity = 81/243 (33.33%), Postives = 119/243 (48.97%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            ++K H+NI  IGHVD GK+T T  +   L       +  F                 +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L + G+  + +P +    +   EGD   E+           L+DA+D+ I +P R  DKP  +P++DV
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITSVLAKQGMATLREFSD---------------IDKAPEERERGITISTAHVEYQTAKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVFLNKVDIADPEL----LELVEMELRELLTEYGFPGDDIPIIKGSALKALEGDPEAEKQI-------MELMDAVDSYIPQPVRDIDKPFLMPVEDV 217          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_BRELN (Elongation factor Tu OS=Brevibacterium linens GN=tuf PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.606e-27
Identity = 83/245 (33.88%), Postives = 127/245 (51.84%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDAL--DNINEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T         I K + +++     ++N+ R+F     +D    E+ERGITI+++  +++T K +   +DAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ +  P +P+S     EGD          W K    L A   DN+ EP+R  DKP  +P++DV
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLADQYP----DLNEARAFDQ---VDNAPEEKERGITINVSHVEYQTEKRHYAHVDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYIVVALNKSDMVD---DEELLELVEFEVRDLLSSQDFDGDNAPVIPVSALKALEGDE--------KWVKSVQDLMAAVDDNVPEPERDVDKPFLMPVEDV 220          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_ANADF (Elongation factor Tu OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.606e-27
Identity = 84/243 (34.57%), Postives = 118/243 (48.56%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+N+  IGHVD GK+T T  +                K  A   +  F     +DK   ERERGITI  A  ++ T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D       K   D +  EV   L +  +   ++P V    +   EGD      + L       LLDA+D+ I  PKR +DKP  +P++DV
Sbjct:    8 RNKPHVNVGTIGHVDHGKTTLTAAIT---------------KYCATQGRAQFMAYDQIDKAPEERERGITIATAHVEYSTDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYMVVFLNKVDMVD---DKELLDLVELEVRELLSEYEFPGNEIPIVKGSALKALEGD-----KSELGEPAIQQLLDAVDSYIPTPKRATDKPFLMPVEDV 220          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU1_PELTS (Elongation factor Tu 1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.606e-27
Identity = 79/241 (32.78%), Postives = 121/241 (50.21%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP-TLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +   L  + K  ++++++               +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           D  V+E+ S  +  G   +++P +  S  +           +W K    L+DA+D  I  P+R  DKP  +P++DV
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITMVLATVGKAQVKKYDE---------------IDNAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKADMVDDPELLELVDMEVRELLSTYEFPG---DEIPIITGSALKAMECACGKRECEWCKSIWELMDAVDEYIPTPQRAVDKPFLMPVEDV 223          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_SACEN (Elongation factor Tu OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tuf PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.709e-27
Identity = 88/244 (36.07%), Postives = 127/244 (52.05%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDW-YKGPTLLDALD-NINEPKRPSDKPLRLPLQDV 800
            ++K H+NI  IGHVD GK+T T  +   L   DK           E+N   F     +DK   E++RGITI IA  +++T K +   +DAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    +  + VP V +S     EGD         +W  K   LLDA+D N+ +P+R +DKP  +P++DV
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITKVLH--DKH---------PELNP--FTPFDEIDKAPEEKQRGITIQIAHVEYQTEKRHYAHVDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVD---DEEIIELVEMEVRELLSAQEFPGDDVPVVRVSALKALEGD--------AEWGDKIMELLDAVDENVPDPERETDKPFLMPIEDV 220          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_RENSM (Elongation factor Tu OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=tuf PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.709e-27
Identity = 83/244 (34.02%), Postives = 124/244 (50.82%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +   L          ++K      +R F     +D    E++RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   D +  EV   L    ++ +  P V +SG    EGD          W K    L++A+D ++ +P R  DKP  +P++DV
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAISKVL----------YDKYPTLNEQRDFAS---IDSAPEEKQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPYLLVALNKSDMVE---DEELLDLVEMEVRELLSSQEFDGDNAPVVRVSGLKALEGDP--------QWVKSVEDLMEAVDESVPDPIRDKDKPFLMPIEDV 220          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_MICLC (Elongation factor Tu OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=tuf PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.709e-27
Identity = 85/245 (34.69%), Postives = 127/245 (51.84%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T         I K + +++     ++N+ R F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ ++ P +  SG    EGD          W K    L+DA+D  I +P R  DKP  +P++DV
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AISKVLYDKYP----DLNEARDFA---TIDSAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPALLVALNKSDMVE---DEELLELVEMEVRELLSSQEFDGDEAPVIRTSGLKALEGDP--------QWVKSVEDLMDAVDEYIPDPVRDKDKPFLMPIEDV 220          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_EHRCR (Elongation factor Tu OS=Ehrlichia chaffeensis (strain Arkansas) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.709e-27
Identity = 83/243 (34.16%), Postives = 121/243 (49.79%), Query Frame = 3
Query:   75 LMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALDNINEPKRPSDKPLRLPLQDV 800
            ++ + K HIN+  IGHVD GK+T T  L   L            K  +    +S KY  + DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK D       +     +  E+   L K GY  + +  V  S  +   + E + +  W  K   L++AL+ I+ P R  DKP  + ++DV
Sbjct:    1 MVEERKPHINVGTIGHVDHGKTTLTAALTTVLA-----------KRLSGEGNKSVKYDEI-DKAPEEKARGITISTAHVEYETENRHYAHVDCPGHADYIKNMITGAAQMDAAILVVSATDGAMP-------QTREHILLAKQVGVKDIVVWMNKCDVVD---DEEMLSLVEMEIRELLSKYGYPGDDIDVVRGSAVKA--LEEETGSGVWSEKIMELMNALEKISLPTREKDKPFLMSIEDV 219          
The following BLAST results are available for this feature:
BLAST of CN186363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_EHRRW3.606e-2735.29Elongation factor Tu OS=Ehrlichia ruminantium (str... [more]
EFTU_EHRRG3.606e-2735.29Elongation factor Tu OS=Ehrlichia ruminantium (str... [more]
EFTU_CHLTE3.606e-2733.33Elongation factor Tu OS=Chlorobium tepidum GN=tuf ... [more]
EFTU_BRELN3.606e-2733.88Elongation factor Tu OS=Brevibacterium linens GN=t... [more]
EFTU_ANADF3.606e-2734.57Elongation factor Tu OS=Anaeromyxobacter sp. (stra... [more]
EFTU1_PELTS3.606e-2732.78Elongation factor Tu 1 OS=Pelotomaculum thermoprop... [more]
EFTU_SACEN4.709e-2736.07Elongation factor Tu OS=Saccharopolyspora erythrae... [more]
EFTU_RENSM4.709e-2734.02Elongation factor Tu OS=Renibacterium salmoninarum... [more]
EFTU_MICLC4.709e-2734.69Elongation factor Tu OS=Micrococcus luteus (strain... [more]
EFTU_EHRCR4.709e-2734.16Elongation factor Tu OS=Ehrlichia chaffeensis (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186363 ID=CN186363; Name=CN186363; organism=Citrus sinensis; type=EST; length=802bp
GCGGTTTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGG
TTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTG
GGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATA
TTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGAT
GCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACA
GGCTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAG
CTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTC
ACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCAC
CACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCT
CTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTG
CCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCT
TGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATG
AGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTG
TA
back to top