CN186363

Overview
NameCN186363
Unique NameCN186363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_EHRCJ (Elongation factor Tu OS=Ehrlichia canis (strain Jake) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.150e-27
Identity = 83/243 (34.16%), Postives = 121/243 (49.79%), Query Frame = 3
Query:   75 LMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALDNINEPKRPSDKPLRLPLQDV 800
            ++ + K HIN+  IGHVD GK+T T  L   L            K  +    +S KY  + DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK D       +     +  E+   L K GY  + +  V  S  +   + E + +  W  K   L++AL+ I+ P R  DKP  + ++DV
Sbjct:    1 MVEERKPHINVGTIGHVDHGKTTLTAALTTVLA-----------KRLSGEGNKSVKYDEI-DKAPEEKARGITISTAHVEYETENRHYAHVDCPGHADYIKNMITGAAQMDAAILVVSATDGAMP-------QTREHILLAKQVGVKDIVVWMNKCDVVD---DEEMLSLVEMEIRELLSKYGYPGDDIDVVRGSAVKA--LEEETGSGVWSEKIMELMNALEKISLPVREKDKPFLMSIEDV 219          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CHLP8 (Elongation factor Tu OS=Chlorobaculum parvum (strain NCIB 8327) GN=tuf PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.150e-27
Identity = 82/243 (33.74%), Postives = 120/243 (49.38%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            ++K H+NI  IGHVD GK+T T  +   L    K     F                 +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L + G+  + +P +    ++   GD   E++          L+DA+D+ I EP R  DKP  +P++DV
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITSVLAKSGKAAAREFGD---------------IDKAPEERERGITISTAHVEYQTDKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVFLNKVDIADPEL----LELVEMELRELLTEYGFPGDDIPIIKGSALNALNGDPEGEKAI-------MELMDAVDDYIPEPVRDVDKPFLMPVEDV 217          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CAMHC (Elongation factor Tu OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=tuf PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.150e-27
Identity = 83/241 (34.44%), Postives = 125/241 (51.87%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +          V+ R  K  AE+   S      +D    E+ERGITI  +  ++ET K +   +D PGH D++KNMITG +Q D A+L+I ST G          QTREH LLA  +GV  ++   NK D           + + +EV   LK+ G+  +++P +  S  +     +   + +W  K   L+DA+D+ I  PKR +DK   +P++D+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAI--------SAVLSR--KGLAELKDYSN-----IDNAPEEKERGITIATSHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVIASTDGPM-------AQTREHILLARQVGVPYIVVFLNKTDMVD---DPELIELVEEEVKDLLKEYGFPGDEIPIIKGSALKALEEAKAGGDGEWSAKIMELMDAVDSYIPTPKRDTDKDFLMPIEDI 223          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_AQUAE (Elongation factor Tu OS=Aquifex aeolicus GN=tufA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.150e-27
Identity = 84/242 (34.71%), Postives = 122/242 (50.41%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+N+  IGHVD GKST T  +   L                E  K + FKY  + DK   E+ERGITI+I   ++ET K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  + V  ++   NK D       +   + +  EV   L K  Y  ++VP +  S       +E+++   W +    LL+A+D  I  P+R  DKP  +P++DV
Sbjct:    8 RTKEHVNVGTIGHVDHGKSTLTSAITCVLAA-----------GLVEGGKAKCFKYEEI-DKAPEEKERGITINITHVEYETAKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHVLLARQVNVPYIVVFMNKCDMVD---DEELLELVELEVRELLSKYEYPGDEVPVIRGSALGALQELEQNSPGKWVESIKELLNAMDEYIPTPQREVDKPFLMPIEDV 227          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CHLT3 (Elongation factor Tu OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.032e-27
Identity = 82/241 (34.02%), Postives = 123/241 (51.04%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            +EK H+NI  IGHVD GK+T T              I +   E  +  K  F     +DK   E+ERGITI  +  ++ET   +   ID PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  + V  ++   NK+D   P+  +    E+ + +SSY    G+  + +P +     +G  +   +   +W  K   L++A+DN I  P R  DKP  +P++DV
Sbjct:    8 REKPHVNIGTIGHVDHGKTTLTA------------AITKVLSEKGQAQKMDFDE---IDKAPEEKERGITISTSHVEYETPSRHYAHIDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAKQVNVPSIVVFMNKVDIADPELIELVEMELRELLSSY----GFPGDDIPII-----QGSALGALNGEAEWVGKIEELMEAVDNYIPTPVRDVDKPFLMPVEDV 217          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_ANATD (Elongation factor Tu OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.032e-27
Identity = 83/241 (34.44%), Postives = 117/241 (48.55%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +                K  A   K  F     +DK   ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  + V  ++   NK+D           + +  EV   L K GY  ++VP V  S  +      +  N   Y+    L+DA+D  I  P+R  DKP  +P++DV
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAIT---------------KVLALKGKAQFMAYDQIDKAPEERERGITINTAHVEYETDARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVNVPYIVVFLNKVDMVD---DPELIELVEMEVRELLSKYGYPGDEVPIVKGSALKALESTSQDPNAPEYQCILELMDAVDKYIPTPQRDIDKPFLMPIEDV 223          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_STROR (Elongation factor Tu OS=Streptococcus oralis GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.049e-26
Identity = 86/243 (35.39%), Postives = 125/243 (51.44%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +          V+ R    A    K    YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E            L++ +D  I EP+R ++KPL LP++DV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSAVNQPK---DYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKIDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDII-------MELMNTVDEYIPEPERDTEKPLLLPVEDV 221          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_PROAC (Elongation factor Tu OS=Propionibacterium acnes GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.049e-26
Identity = 86/243 (35.39%), Postives = 127/243 (52.26%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS-FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTN--LDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H NI  IGH+D GK+T T         I K + +++     E+N+ S F     +DK   ER+RGITI IA  +++T K +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ +  P V IS F+     E+ T   LD      L+DA+D  I +P+R  DKP  +P++DV
Sbjct:    8 RTKPHCNIGTIGHIDHGKTTLTA-------AISKVLHDKYP----ELNEESPFDQ---IDKAPEERQRGITISIAHIEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPAIVVALNKCDMVD---DEELIELVEMEVRELLTSQEFDGDNCPVVRISAFQALQGDEKWTQSILD------LMDAVDEYIPQPERDLDKPFLMPIEDV 220          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_THESQ (Elongation factor Tu OS=Thermotoga sp. (strain RQ2) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.370e-26
Identity = 85/241 (35.27%), Postives = 119/241 (49.38%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+N+  IGH+D GKST T  +   L          +++               +DK   E+ RGITI+I   +++T K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D           D +  EV   L + GY  ++VP +  S  +         N + YK    LLDA+DN I EP+R  DKP  +P++DV
Sbjct:    8 RTKPHVNVGTIGHIDHGKSTLTAAITKYLSLKGLAQYVPYDQ---------------IDKAPEEKARGITINITHVEYQTEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVEVPYMIVFINKTDMVD---DPELIDLVEMEVRDLLSQYGYPGDEVPVIRGSALKAVE-APNDPNHEAYKPIQELLDAMDNYIPEPQREVDKPFLMPIEDV 222          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_THEP1 (Elongation factor Tu OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.370e-26
Identity = 85/241 (35.27%), Postives = 119/241 (49.38%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+N+  IGH+D GKST T  +   L          +++               +DK   E+ RGITI+I   +++T K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D           D +  EV   L + GY  ++VP +  S  +         N + YK    LLDA+DN I EP+R  DKP  +P++DV
Sbjct:    8 RTKPHVNVGTIGHIDHGKSTLTAAITKYLSLKGLAQYVPYDQ---------------IDKAPEEKARGITINITHVEYQTEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVEVPYMIVFINKTDMVD---DPELIDLVEMEVRDLLSQYGYPGDEVPVIRGSALKAVE-APNDPNHEAYKPIQELLDAMDNYIPEPQREVDKPFLMPIEDV 222          
The following BLAST results are available for this feature:
BLAST of CN186363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_EHRCJ6.150e-2734.16Elongation factor Tu OS=Ehrlichia canis (strain Ja... [more]
EFTU_CHLP86.150e-2733.74Elongation factor Tu OS=Chlorobaculum parvum (stra... [more]
EFTU_CAMHC6.150e-2734.44Elongation factor Tu OS=Campylobacter hominis (str... [more]
EFTU_AQUAE6.150e-2734.71Elongation factor Tu OS=Aquifex aeolicus GN=tufA P... [more]
EFTU_CHLT38.032e-2734.02Elongation factor Tu OS=Chloroherpeton thalassium ... [more]
EFTU_ANATD8.032e-2734.44Elongation factor Tu OS=Anaerocellum thermophilum ... [more]
EFTU_STROR1.049e-2635.39Elongation factor Tu OS=Streptococcus oralis GN=tu... [more]
EFTU_PROAC1.049e-2635.39Elongation factor Tu OS=Propionibacterium acnes GN... [more]
EFTU_THESQ1.370e-2635.27Elongation factor Tu OS=Thermotoga sp. (strain RQ2... [more]
EFTU_THEP11.370e-2635.27Elongation factor Tu OS=Thermotoga petrophila (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186363 ID=CN186363; Name=CN186363; organism=Citrus sinensis; type=EST; length=802bp
GCGGTTTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGG
TTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTG
GGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATA
TTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGAT
GCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACA
GGCTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAG
CTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTC
ACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCAC
CACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCT
CTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTG
CCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCT
TGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATG
AGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTG
TA
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