CN186363

Overview
NameCN186363
Unique NameCN186363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_LACF3 (Elongation factor Tu OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.370e-26
Identity = 85/243 (34.98%), Postives = 118/243 (48.56%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +   L        E +                 +D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D           D +  EV   L +  +  + VP V    +   EGD   E+           LLD +D  I  PKRP+DKP  +P++DV
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITKVLAAKGLAKAEDYSD---------------IDAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVEYIVVFLNKTDLVD---DDELVDLVEMEVRDLLSEYDFPGDDVPVVRGSALKALEGDPEQEQVV-------LHLLDVVDEYIPTPKRPTDKPFMMPVEDV 219          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CORA7 (Elongation factor Tu OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.370e-26
Identity = 86/243 (35.39%), Postives = 130/243 (53.50%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDAL-DNINEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+TTT         I K + + + +E       +F +  ++DK   E+ERGITI+I+  ++ T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L +  Y+ E+ P V IS     EGD    +S  +D      L+ A  D+I +P+R  DKP  +P++D+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTTTA-------AITKVLADAYPEE-----NTAFAFD-MIDKAPEEKERGITINISHVEYSTPKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVD---DEEIIELVEMEIRELLAEQDYD-EEAPIVHISALKALEGDEKWVQSV-ID------LMQACDDSIPDPERELDKPFLMPIEDI 219          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_AQUPY (Elongation factor Tu OS=Aquifex pyrophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.370e-26
Identity = 84/242 (34.71%), Postives = 121/242 (50.00%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+N+  IGHVD GKST T  +   L                E  K + FKY  + DK   E+ERGITI+I   ++ET K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  + V  ++   NK D       +   + +  EV   L K  Y  ++VP +  S       +E+++   W      LL+A+D  I  P+R  DKP  +P++DV
Sbjct:    8 RTKEHVNVGTIGHVDHGKSTLTSAITCVLAA-----------GLVEGGKAKCFKYEEI-DKAPEEKERGITINITHVEYETAKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHVLLARQVNVPYIVVFMNKCDMVD---DEELLELVELEVRELLSKYEYPGDEVPVIRGSALGALQELEQNSPGKWVGSIKELLNAMDEYIPTPEREVDKPFLMPIEDV 227          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_THEMA (Elongation factor Tu OS=Thermotoga maritima GN=tuf PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.789e-26
Identity = 85/241 (35.27%), Postives = 119/241 (49.38%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+N+  IGH+D GKST T  +   L          +++               +DK   E+ RGITI+I   ++ET K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D           D +  EV   L + GY  ++VP +  S  +         N + YK    LLDA+DN I +P+R  DKP  +P++DV
Sbjct:    8 RTKPHVNVGTIGHIDHGKSTLTAAITKYLSLKGLAQYIPYDQ---------------IDKAPEEKARGITINITHVEYETEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVEVPYMIVFINKTDMVD---DPELIDLVEMEVRDLLSQYGYPGDEVPVIRGSALKAVE-APNDPNHEAYKPIQELLDAMDNYIPDPQRDVDKPFLMPIEDV 222          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_THEM4 (Elongation factor Tu OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.789e-26
Identity = 80/240 (33.33%), Postives = 117/240 (48.75%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+N+  IGH+D GK+T T  +   L    +     +E+               +DK   E+ERGITI+IA  ++ET K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D       +   D +  EV   L K  +  + +P +  S  +         +  +     LLD +D    EP+R +DKP  +P++DV
Sbjct:    8 RSKPHLNVGTIGHIDHGKTTLTAAITKYLSLFGRADYTPYEQ---------------IDKAPEEKERGITINIAHIEYETEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMIVFINKTDMVD---DEELVDLVEMEVRELLNKYEFPGDDLPVIRGSALKAVEASNDPNDEAYAPIKELLDTMDEYFPEPQRETDKPFLMPVEDV 222          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_STRA5 (Elongation factor Tu OS=Streptococcus agalactiae serotype V GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.789e-26
Identity = 86/247 (34.82%), Postives = 125/247 (50.61%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDN-----MIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD      ++E  + +D Y           I EP+R +DKPL LP++DV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPTSVNQPK---DYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDEKYEDIIMELMSTVDEY-----------IPEPERDTDKPLLLPVEDV 221          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_STRA3 (Elongation factor Tu OS=Streptococcus agalactiae serotype III GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.789e-26
Identity = 86/247 (34.82%), Postives = 125/247 (50.61%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDN-----MIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD      ++E  + +D Y           I EP+R +DKPL LP++DV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPTSVNQPK---DYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDEKYEDIIMELMSTVDEY-----------IPEPERDTDKPLLLPVEDV 221          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_STRA1 (Elongation factor Tu OS=Streptococcus agalactiae serotype Ia GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.789e-26
Identity = 86/247 (34.82%), Postives = 125/247 (50.61%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDN-----MIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD      ++E  + +D Y           I EP+R +DKPL LP++DV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPTSVNQPK---DYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDEKYEDIIMELMSTVDEY-----------IPEPERDTDKPLLLPVEDV 221          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_EIMTE (Elongation factor Tu, apicoplast OS=Eimeria tenella GN=tufA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.789e-26
Identity = 83/242 (34.30%), Postives = 120/242 (49.59%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERS-TNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDV 800
            K KTH+NI  IGHVD GK+T T  +   L  I+    + + +               +D    E+ RGITI+ +  ++ET   +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  +I   NK+D           + +  EV   L    YN +    +  S  +    IE++  N  W K    L++ALD +I EPKR  +KP  L ++D+
Sbjct:    8 KTKTHLNIGTIGHVDHGKTTLTAAITSYLSKINNTKAKSYSE---------------IDSAPEEKARGITINTSHIEYETNLRHYAHIDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-------QTREHLLLAKQVGVPNIIVFLNKIDMVE---DNELLELVELEVRELLDIYEYNGDSTSIIKGSALKALEYIEKNDLNNKWVKNLKNLIEALDKSIPEPKRDINKPFLLSIEDI 224          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPB (Elongation factor Tu OS=Chlorobium phaeobacteroides (strain BS1) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.789e-26
Identity = 83/243 (34.16%), Postives = 121/243 (49.79%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            ++K H+NI  IGHVD GK+T T  +   L             +A     R F     +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L +  +  + +P +    +   EGD   E++          L+DA+D+ I EP R  DKP  +P++DV
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITSVLA------------KAGNAEMREFGD---IDKAPEERERGITISTAHVEYQTEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVFLNKVDIADPEL----LELVELELRELLTEYDFPGDDIPIIKGSALKALEGDAEAEKAI-------MELMDAVDDYIPEPVRDVDKPFLMPVEDV 217          
The following BLAST results are available for this feature:
BLAST of CN186363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_LACF31.370e-2634.98Elongation factor Tu OS=Lactobacillus fermentum (s... [more]
EFTU_CORA71.370e-2635.39Elongation factor Tu OS=Corynebacterium aurimucosu... [more]
EFTU_AQUPY1.370e-2634.71Elongation factor Tu OS=Aquifex pyrophilus GN=tuf ... [more]
EFTU_THEMA1.789e-2635.27Elongation factor Tu OS=Thermotoga maritima GN=tuf... [more]
EFTU_THEM41.789e-2633.33Elongation factor Tu OS=Thermosipho melanesiensis ... [more]
EFTU_STRA51.789e-2634.82Elongation factor Tu OS=Streptococcus agalactiae s... [more]
EFTU_STRA31.789e-2634.82Elongation factor Tu OS=Streptococcus agalactiae s... [more]
EFTU_STRA11.789e-2634.82Elongation factor Tu OS=Streptococcus agalactiae s... [more]
EFTU_EIMTE1.789e-2634.30Elongation factor Tu, apicoplast OS=Eimeria tenell... [more]
EFTU_CHLPB1.789e-2634.16Elongation factor Tu OS=Chlorobium phaeobacteroide... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186363 ID=CN186363; Name=CN186363; organism=Citrus sinensis; type=EST; length=802bp
GCGGTTTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGG
TTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTG
GGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATA
TTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGAT
GCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACA
GGCTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAG
CTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTC
ACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCAC
CACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCT
CTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTG
CCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCT
TGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATG
AGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTG
TA
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