CN186363

Overview
NameCN186363
Unique NameCN186363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBL (Elongation factor Tu OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 81/242 (33.47%), Postives = 124/242 (51.24%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDV 220          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBK (Elongation factor Tu OS=Clostridium botulinum (strain Okra / Type B1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 81/242 (33.47%), Postives = 124/242 (51.24%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDV 220          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBH (Elongation factor Tu OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 81/242 (33.47%), Postives = 124/242 (51.24%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDV 220          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CLOB1 (Elongation factor Tu OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 81/242 (33.47%), Postives = 124/242 (51.24%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDV 220          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CHLL2 (Elongation factor Tu OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 82/243 (33.74%), Postives = 122/243 (50.21%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            ++K H+NI  IGHVD GK+T T  +   L            K+   + +R F     +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L +  +  + +P +    +   +GD   E++          L+DA+D  I EP R  DKP  +P++DV
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITSVLA-----------KQGLAL-QRDFGS---IDKAPEERERGITISTAHVEYQTKKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVFLNKVDIADPEL----LELVELELRELLTEYNFPGDDIPIIKGSALKALDGDPEGEKAI-------MELMDAVDEFIPEPVRDVDKPFLMPVEDV 217          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_CHLCH (Elongation factor Tu OS=Chlorobium chlorochromatii (strain CaD3) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 81/243 (33.33%), Postives = 121/243 (49.79%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            ++K H+NI  IGHVD GK+T T  +   L             +     +R F     +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L +  +  + +P +    +   EGD   E++          L+DA+D  I +P R  DKP  +P++DV
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITLVLS------------KQGLAQERDFGS---IDKAPEERERGITISTAHVEYQTDKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVNVPSLVVFLNKVDIADPEL----IELVELELRELLSQYDFPGDDIPIIKGSALKAMEGDAEGEKAI-------LELMDAVDAFIPDPVRDVDKPFLMPVEDV 217          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_ARCB4 (Elongation factor Tu OS=Arcobacter butzleri (strain RM4018) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 77/241 (31.95%), Postives = 118/241 (48.96%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T         I   +  ++  E  + ++        +D    ERERGITI  +  ++ET K +   +D PGH D++KNMITG +Q D A+L+I ST G          QTREH LL+  +GV  ++   NK D   P+  +   + +  E+   L    +  +  P +  S F+     +      W  K   L+DA+D  I  P+R  D+   +P++DV
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTA-------AISAVLAVKYGGEMKDYDQ--------IDNAPEERERGITIATSHIEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGAILVIASTDGPM-------AQTREHILLSKQVGVPYIVVFMNKEDQLDPQDKEEMLELVEMEIRELLSTYDFPGDDTPIIAGSAFQALEEAKAGAVGPWGEKIVALMDAVDEYIPTPERDIDQAFLMPVEDV 226          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTM_ARATH (Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 79/241 (32.78%), Postives = 121/241 (50.21%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDN-MIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+N+  IGHVD GK+T T         I K + E  + +A   ++        +DK   E++RGITI  A  ++ET K +   +D PGH D++KNMITG +Q D  +L++    G          QT+EH LLA  +GV  ++C  NK+D           +  ++E+ S+ K  G +   +    +S  +G N  I R   L       L+DA+D  I +P R  DKP  +P++DV
Sbjct:   63 RNKPHVNVGTIGHVDHGKTTLTA-------AITKVLAEEGKAKAIAFDE--------IDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHILLARQVGVPSLVCFLNKVDVVDDPELLELVEMELRELLSFYKFPGDDIPIIRGSALSALQGTNDEIGRQAIL------KLMDAVDEYIPDPVRVLDKPFLMPIEDV 275          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: CYSN_METEP (Sulfate adenylyltransferase subunit 1 OS=Methylobacterium extorquens (strain PA1) GN=cysN PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 72/239 (30.13%), Postives = 120/239 (50.21%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQ 794
            + K  +  +  G VD GKST  G L++    I    +   ++++ +   +  +   A ++D L+AERE+GITID+A   F T +    V D PGH  + +NM TG S AD AV+++D+  G          Q+R HALL   LG++++    NKMD     +S+ +++ IV    ++   + +   +V  +P+S   GDN++   T   WY    LL  L+ +           R+P+Q
Sbjct:   20 QNKEVLRFITCGSVDDGKSTLIGRLLHDTKQIFDDQVTALQRDSRKHGTQGGEVDLALLVDGLQAEREQGITIDVAYRFFSTDRRSFIVADTPGHEQYTRNMATGASTADLAVILVDARHG-------LTRQSRRHALLVSLLGIRRVALAINKMDLV--GWSQDKFEAIVSGFQAFAAPLNFT--EVRAIPLSAKNGDNVVLPGTAATWYTDVPLLRYLEEVPVKSEERAAAFRMPVQ 247          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_SOLUE (Elongation factor Tu OS=Solibacter usitatus (strain Ellin6076) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.408e-25
Identity = 78/243 (32.10%), Postives = 120/243 (49.38%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGH+D GK+T T  +   L              A    K  F+    +D    E+ RGITI +A  ++ET K +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK+D           D +  EV   LK   +  + +P V +S      G+   E++ +        L++A+D+ I  P+R  DKP  +P++D+
Sbjct:    8 RSKPHVNIGTIGHIDHGKTTLTAAITKVL--------------AKHNPKNKFRSFDSIDNAPEEKARGITIAVAHVEYETAKRHYAHVDCPGHADYIKNMITGAAQMDGAIVVVAATDGPMP-------QTREHILLARQVGVPYIVVAMNKVDMVD---DSELLDLVELEVRELLKSYQFPGDDLPVVRVSALGALNGEPQWEKTVD-------ELMEAVDSYIPMPERAIDKPFIMPIEDI 219          
The following BLAST results are available for this feature:
BLAST of CN186363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CLOBL3.375e-2533.47Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBK3.375e-2533.47Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBH3.375e-2533.47Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOB13.375e-2533.47Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CHLL23.375e-2533.74Elongation factor Tu OS=Chlorobium limicola (strai... [more]
EFTU_CHLCH3.375e-2533.33Elongation factor Tu OS=Chlorobium chlorochromatii... [more]
EFTU_ARCB43.375e-2531.95Elongation factor Tu OS=Arcobacter butzleri (strai... [more]
EFTM_ARATH3.375e-2532.78Elongation factor Tu, mitochondrial OS=Arabidopsis... [more]
CYSN_METEP3.375e-2530.13Sulfate adenylyltransferase subunit 1 OS=Methyloba... [more]
EFTU_SOLUE4.408e-2532.10Elongation factor Tu OS=Solibacter usitatus (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186363 ID=CN186363; Name=CN186363; organism=Citrus sinensis; type=EST; length=802bp
GCGGTTTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGG
TTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTG
GGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATA
TTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGAT
GCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACA
GGCTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAG
CTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTC
ACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCAC
CACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCT
CTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTG
CCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCT
TGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATG
AGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTG
TA
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