CN186363

Overview
NameCN186363
Unique NameCN186363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_SPHWW (Elongation factor Tu OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.756e-25
Identity = 83/245 (33.88%), Postives = 123/245 (50.20%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV---PISGFEGDN-MIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H NI  IGHVD GK++ T  +                K  AE    +F     +DK   ERERGITI  A  ++ET + +   +D PGH D++KNMITG +Q D  +L++ +T G          QTREH LLA  +GV  ++   NK+D        A   E+V+ EV   L    +  + +P +    +   +G N  I R+  L+      L+ A+D+ I +P+RP DKP  +P++DV
Sbjct:    8 RTKPHCNIGTIGHVDHGKTSLTAAIT---------------KVLAETGGATFVDYANIDKAPEERERGITISTAHVEYETEQRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMP-------QTREHILLARQVGVPALVVFMNKVDLV----DDAEILELVELEVRELLSSYEFPGDDIPVIKGSAVKALDGTNDEIGRNAVLE------LMAAVDSYIPQPERPLDKPFLMPIEDV 220          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_RECAM (Elongation factor Tu, mitochondrial OS=Reclinomonas americana GN=TUFA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.756e-25
Identity = 76/243 (31.28%), Postives = 120/243 (49.38%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H NI  IGHVD GK+T T  +   L      V   +++               +DK   E++RGITI  +  ++ETTK +   ID PGH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK+D           D +  EV   L    Y  +++P +    +   +G+   ++S          L++A+DN I +P+R  D+P  +P++DV
Sbjct:    8 RTKPHCNIGTIGHVDHGKTTLTAAITKVLSETGGAVFTDYDQ---------------IDKAPEEKKRGITISTSHVEYETTKRHYAHIDCPGHEDYVKNMITGAAQMDGAILVVSAVDGPMP-------QTREHILLSRQVGVPSLVVFLNKVDMVN---DPEMLDLVEMEVRELLLSYKYPGDEIPIIRGSALKALQGEIEYKKSI-------LKLMEAVDNYIPQPERSFDRPFLMPVEDV 218          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_PELPD (Elongation factor Tu OS=Pelobacter propionicus (strain DSM 2379) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.756e-25
Identity = 77/240 (32.08%), Postives = 118/240 (49.17%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK+T T  +   L G  +   + F++               +D    ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P V  S  +   +    + L       L+DA+D+ I +P+R  DKP  +P++DV
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITKVLAGKGQAEFKAFDQ---------------IDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPIVKGSALKA--LEGEKSELGEDSIIKLMDAVDSYIPDPERAVDKPFLMPVEDV 220          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPN (Elongation factor Tu OS=Mycoplasma pneumoniae GN=tuf PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.756e-25
Identity = 77/242 (31.82%), Postives = 120/242 (49.59%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQD 797
            + K H+N+  IGH+D GK+T T  +   L    K    R+++               +DK   E+ RGITI+ A  ++ + K +   +D PGH D+IKNMITG +Q D A+L++ +T        S   QTREH LLA  +GV +M+   NK D  T +  +   + + +EV   L   G++ +  P +    +   EGD   E   +        L++A+D  I  P+R  DKP  L ++D
Sbjct:    8 RSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDQ---------------IDKAPEEKARGITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD-------SVMPQTREHILLARQVGVPRMVVFLNKCDIATDEEVQ---ELVAEEVRDLLTSYGFDGKNTPIIYGSALKALEGDPKWEAKIH-------DLMNAVDEWIPTPEREVDKPFLLAIED 217          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_MACCJ (Elongation factor Tu OS=Macrococcus caseolyticus (strain JCSC5402) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.756e-25
Identity = 81/244 (33.20%), Postives = 120/244 (49.18%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGH----LIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + KTH NI  IGHVD GK+T T      L  KLGG                  RS+     +D    E+ERGITI+ +  ++ET K +   +D PGH D++KNMITG +Q D  +L++ +  G          QTREH LL+  +GV  ++   NK+D       +   + +  EV   L +  +  + VP +  S  +    +E   +    K   L+DA+D  I  P+R SDKP  +P++DV
Sbjct:    8 RSKTHANIGTIGHVDHGKTTLTAAIATVLSKKLGG----------------EARSYDQ---IDNAPEEKERGITINTSHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLSRNVGVPALVVFLNKVDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGVEEYED----KIMELMDAVDEYIPTPERDSDKPFMMPVEDV 218          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_DESDG (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain G20) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.756e-25
Identity = 86/249 (34.54%), Postives = 125/249 (50.20%), Query Frame = 3
Query:   78 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP--TLLDALDN-INEPKRPSDKPLRLPLQDV 800
            MGKEK      H+NI  IGH+D GK+T T   I K+  +             +M  ++  Y  + DK   E+ERGITI  A  ++ETT  +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    +  +  P +  S  +    +E  +  D    P   LLDA D+ I EP+R +DKP  +P++DV
Sbjct:    1 MGKEKFERTKPHVNIGTIGHIDHGKTTLTA-AITKIASL-------------KMGSKAVAYDEI-DKAPEEKERGITIATAHVEYETTLRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPSIVVFLNKCDMVD---DEELLELVELEVRELLSSYDFPGDDTPVIRGSALKA---LECDSADDDAAKPILELLDACDSYIPEPERDTDKPFLMPIEDV 221          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_DESDA (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.756e-25
Identity = 88/252 (34.92%), Postives = 120/252 (47.62%), Query Frame = 3
Query:   78 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD--NMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            MGKEK      H+NI  IGH+D GK+T T  +                K A   +   F     +DK   E+ERGITI  +  ++ET K +   +D PGH D+IKNMITG +Q D  +L++ +T G          QTREH LLA  +GV Q++   NK D       +   + +  EV   L    +  + VP +    +   E D  N  E    LD      LLDA D+ I EP R  DKP  +P++DV
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTAAIT---------------KVANLKSGGKFISYDEIDKAPEEKERGITIATSHVEYETDKRHYAHVDCPGHADYIKNMITGAAQMDGGILVVAATDGPMP-------QTREHILLARQVGVPQLVVFLNKCDLVD---DEELLELVELEVRELLSSYDFPGDDVPVIRGSALKALESDDPNSAEAKCILD------LLDACDSFIPEPVRDIDKPFLMPIEDV 221          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_ACICJ (Elongation factor Tu OS=Acidiphilium cryptum (strain JF-5) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.756e-25
Identity = 79/240 (32.92%), Postives = 117/240 (48.75%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H NI  IGHVD GK++ T  +                K  AE    +F+    +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NKMD   P       + +  EV   L K  +  + +P   I G     + + +  L       L++A+D+ I +P+RP DKP  +P++DV
Sbjct:    8 RTKPHCNIGTIGHVDHGKTSLTAAIT---------------KVLAESGGATFRAYDSIDAAPEERARGITIATAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKMDMADPDL----VELVEMEVRDLLSKYEFPGDDIPI--IKGSALCALEDSNAELGREAILKLMEAVDSYIPQPERPKDKPFLMPVEDV 219          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_RICTY (Elongation factor Tu OS=Rickettsia typhi GN=tuf PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.518e-25
Identity = 78/246 (31.71%), Postives = 120/246 (48.78%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+   ++P +    +   EG    E++ N        L++A+D+ I +P R +DKP  +P++DV
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIILAKTGGAKATAYDQ------------------IDAAPEEKERGITISTAHVEYETNNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYGFPGNEIPIIKGSALQALEGKPEGEKAIN-------ELMNAVDSYIPQPIRATDKPFLMPIEDV 218          
BLAST of CN186363 vs. ExPASy Swiss-Prot
Match: EFTU_LAWIP (Elongation factor Tu OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.518e-25
Identity = 80/240 (33.33%), Postives = 118/240 (49.17%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 800
            + K H+N+  IGH+D GK+T T  +                K A+      F     +DK   E+ERGITI  A  ++ET K +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D           + +  E+   L   GY  + VP +  S  +  N  + + + D      LLDA D+ I +P+R  DKP  +P++DV
Sbjct:    8 RNKPHVNVGTIGHIDHGKTTLTAAIT---------------KVASMKMGGKFVGYDEIDKAPEEKERGITIATAHVEYETPKRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPYLVVFMNKCDMVD---DPELLELVELEIRELLSTYGYPGDDVPVIRGSALKALNS-DSADSDDAKPILELLDACDSYIPDPQRDIDKPFLMPIEDV 221          
The following BLAST results are available for this feature:
BLAST of CN186363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SPHWW5.756e-2533.88Elongation factor Tu OS=Sphingomonas wittichii (st... [more]
EFTU_RECAM5.756e-2531.28Elongation factor Tu, mitochondrial OS=Reclinomona... [more]
EFTU_PELPD5.756e-2532.08Elongation factor Tu OS=Pelobacter propionicus (st... [more]
EFTU_MYCPN5.756e-2531.82Elongation factor Tu OS=Mycoplasma pneumoniae GN=t... [more]
EFTU_MACCJ5.756e-2533.20Elongation factor Tu OS=Macrococcus caseolyticus (... [more]
EFTU_DESDG5.756e-2534.54Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_DESDA5.756e-2534.92Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_ACICJ5.756e-2532.92Elongation factor Tu OS=Acidiphilium cryptum (stra... [more]
EFTU_RICTY7.518e-2531.71Elongation factor Tu OS=Rickettsia typhi GN=tuf PE... [more]
EFTU_LAWIP7.518e-2533.33Elongation factor Tu OS=Lawsonia intracellularis (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186363 ID=CN186363; Name=CN186363; organism=Citrus sinensis; type=EST; length=802bp
GCGGTTTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGG
TTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTG
GGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATA
TTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGAT
GCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACA
GGCTGACTGTGCTGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAG
CTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTC
ACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCAC
CACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCT
CTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTG
CCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCT
TGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATG
AGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTG
TA
back to top