EL492562

Overview
NameEL492562
Unique NameEL492562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length255
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_BOVIN (40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.373e-12
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            +RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEI
Sbjct:   70 VRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEI 108          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_ICTPU (40S ribosomal protein S16 OS=Ictalurus punctatus GN=rps16 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.100e-12
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            +RVKGGGH +Q+YAIRQSI+KALVA+YQKYVDE SKKEI
Sbjct:   70 VRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEI 108          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.906e-12
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            IRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+
Sbjct:   73 IRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEV 111          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.906e-12
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            IRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+
Sbjct:   73 IRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEV 111          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_HETFO (40S ribosomal protein S16 OS=Heteropneustes fossilis GN=rps16 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.906e-12
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            +RVKGGGH +Q+YAIRQ+I+KALVA+YQKYVDE SKKEI
Sbjct:   70 VRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEI 108          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.906e-12
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            IR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEI
Sbjct:   70 IRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEI 108          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_DROME (40S ribosomal protein S16 OS=Drosophila melanogaster GN=RpS16 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.019e-12
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            +RV GGGH +QIYAIRQ+I+KALVAFYQKYVDE SKKEI
Sbjct:   72 VRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEI 110          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_SPOFR (40S ribosomal protein S16 OS=Spodoptera frugiperda GN=RpS16 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.009e-11
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            + VKGGGH +Q+YAIRQ+I+KAL+AFYQKYVDE SKKEI
Sbjct:   75 VTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEI 113          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_CAEEL (40S ribosomal protein S16 OS=Caenorhabditis elegans GN=rps-16 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.476e-11
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            IRV GGGH +QIYA+RQ++AKALVA+Y KYVDEQSK+E+
Sbjct:   68 IRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKREL 106          
BLAST of EL492562 vs. ExPASy Swiss-Prot
Match: RS16_AEDAE (40S ribosomal protein S16 OS=Aedes aegypti GN=RpS16 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.846e-11
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   13 IRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEI 129
            IRV GGGH +QIYAIRQ+I+KALV+FYQKYVDE S+KE+
Sbjct:   72 IRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKEL 110          
The following BLAST results are available for this feature:
BLAST of EL492562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS16_BOVIN2.373e-1284.6240S ribosomal protein S16 OS=Bos taurus GN=RPS16 P... [more]
RS16_ICTPU3.100e-1282.0540S ribosomal protein S16 OS=Ictalurus punctatus G... [more]
RS16_ORYSJ6.906e-1284.6240S ribosomal protein S16 OS=Oryza sativa subsp. j... [more]
RS16_ORYSI6.906e-1284.6240S ribosomal protein S16 OS=Oryza sativa subsp. i... [more]
RS16_HETFO6.906e-1279.4940S ribosomal protein S16 OS=Heteropneustes fossil... [more]
RS162_ARATH6.906e-1284.6240S ribosomal protein S16-2 OS=Arabidopsis thalian... [more]
RS16_DROME9.019e-1282.0540S ribosomal protein S16 OS=Drosophila melanogast... [more]
RS16_SPOFR2.009e-1176.9240S ribosomal protein S16 OS=Spodoptera frugiperda... [more]
RS16_CAEEL4.476e-1174.3640S ribosomal protein S16 OS=Caenorhabditis elegan... [more]
RS16_AEDAE5.846e-1176.9240S ribosomal protein S16 OS=Aedes aegypti GN=RpS1... [more]

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Properties
Property NameValue
Genbank descriptionC3212 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3212, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492562 ID=EL492562; Name=EL492562; organism=Citrus sinensis; type=EST; length=255bp
GACTGCGTAGTGATCCGTGTGAAAGGTGGAGGTCACACGTCACAAATCTA
TGCAATTCGTCAGTCAATAGCGAAAGCACTTGTTGCATTTTACCAGAAGT
ATGTTGATGAGCAGTCGAAGAAGGAGATCTGAAAATGGTGGCAGCTACCA
TGATACACAACTACAATATTCAATTAGTGGAAGCACAAACAATTTCACCA
ACAGCTACTGTTGTGATTCGAATGACAAATGGTTTGATGGTTACTCAGGA
CTCAT
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