EL492548

Overview
NameEL492548
Unique NameEL492548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length191
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BRAJA (ATP synthase subunit alpha OS=Bradyrhizobium japonicum GN=atpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.061e-12
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK +N +   E+  LYCVYVAVGQKRSTVAQ V++L E  ALEYSI+VAATASD
Sbjct:  184 LNQKPLNAQP-DENIKLYCVYVAVGQKRSTVAQFVKVLEEQGALEYSIIVAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_YEAST (ATP synthase subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=ATP1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N   + ES+ LYCVYVAVGQKRSTVAQLVQ L + +A++YSI+VAATAS+
Sbjct:  221 LNQKRWN-NGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASE 275          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_NOVAD (ATP synthase subunit alpha OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=atpA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK +N   T E + LYC+YVAVGQKRSTVAQ+V+ L E  A+EYSI+VAATAS+
Sbjct:  184 INQKAVNA-GTDEGKKLYCIYVAVGQKRSTVAQIVRQLEENGAMEYSIVVAATASE 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_OCHA4 (ATP synthase subunit alpha OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.810e-12
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     +SE LYCVYVA+GQKRSTVAQ V++L E  ALEYSI++AATASD
Sbjct:  184 LNQKPIHDNGP-DSEKLYCVYVAIGQKRSTVAQFVKVLEERGALEYSIVIAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_JANSC (ATP synthase subunit alpha OS=Jannaschia sp. (strain CCS1) GN=atpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.810e-12
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = -3
Query:   13 VNQKEMNPRA-TSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N  A   E++ LYC+YVAVGQKRSTVAQLV+ L E  A+EYSI+VAATASD
Sbjct:  184 LNQKSYNDAAGDDENKKLYCIYVAVGQKRSTVAQLVKKLEETGAIEYSIVVAATASD 240          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_HYPNA (ATP synthase subunit alpha OS=Hyphomonas neptunium (strain ATCC 15444) GN=atpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.810e-12
Identity = 33/56 (58.93%), Postives = 46/56 (82.14%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N  A S+ + L+CVYVA+GQKRSTVAQ+V++L E  AL+Y+I+V+ATAS+
Sbjct:  185 LNQKPTNDAAKSDKDKLFCVYVAIGQKRSTVAQVVKVLEERGALDYTIVVSATASE 240          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BRASO (ATP synthase subunit alpha OS=Bradyrhizobium sp. (strain ORS278) GN=atpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.810e-12
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK +N +   E   LYCVYVAVGQKRSTVAQ V++L E  ALEYSI+VAATASD
Sbjct:  184 LNQKPLNAQP-DEKIKLYCVYVAVGQKRSTVAQFVKVLEEQGALEYSIVVAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BRASB (ATP synthase subunit alpha OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.810e-12
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK +N +   E   LYCVYVAVGQKRSTVAQ V++L E  ALEYSI+VAATASD
Sbjct:  184 LNQKPLNAQP-DEKIKLYCVYVAVGQKRSTVAQFVKVLEEQGALEYSIVVAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_SCHPO (ATP synthase subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=atp1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +N K  N  ++ ES+ LYCVYVAVGQKRSTVAQLVQ L E ++L+YSI+VAATAS+
Sbjct:  212 LNHKRWN-NSSDESKKLYCVYVAVGQKRSTVAQLVQKLEENDSLKYSIIVAATASE 266          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_PARL1 (ATP synthase subunit alpha OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK +N +   E++ LYC+YVA+GQKRSTVAQ+ + L E  ALEY+I+VAATASD
Sbjct:  184 LNQKPLN-QGDDENQKLYCIYVAIGQKRSTVAQIAKTLEENGALEYTIIVAATASD 238          
The following BLAST results are available for this feature:
BLAST of EL492548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
ATPA_BRAJA1.061e-1267.86ATP synthase subunit alpha OS=Bradyrhizobium japon... [more]
ATPA_YEAST1.386e-1266.07ATP synthase subunit alpha, mitochondrial OS=Sacch... [more]
ATPA_NOVAD1.386e-1264.29ATP synthase subunit alpha OS=Novosphingobium arom... [more]
ATPA_OCHA41.810e-1264.29ATP synthase subunit alpha OS=Ochrobactrum anthrop... [more]
ATPA_JANSC1.810e-1266.67ATP synthase subunit alpha OS=Jannaschia sp. (stra... [more]
ATPA_HYPNA1.810e-1258.93ATP synthase subunit alpha OS=Hyphomonas neptunium... [more]
ATPA_BRASO1.810e-1267.86ATP synthase subunit alpha OS=Bradyrhizobium sp. (... [more]
ATPA_BRASB1.810e-1267.86ATP synthase subunit alpha OS=Bradyrhizobium sp. (... [more]
ATPA_SCHPO2.364e-1266.07ATP synthase subunit alpha, mitochondrial OS=Schiz... [more]
ATPA_PARL12.364e-1260.71ATP synthase subunit alpha OS=Parvibaculum lavamen... [more]

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Properties
Property NameValue
Genbank descriptionC2931 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2931, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492548 ID=EL492548; Name=EL492548; organism=Citrus sinensis; type=EST; length=191bp
GACTGCGTAGTGATCCGAGGCGGTGGCTGCTACAAGAATGGAATATTCCA
AAGCATTCCCTTCTGAAAGAATTTGAACTAATTGTGCTACAGTTGAGCGT
TTTTGTCCAACCGCTACATAGACACAATACAATGTCTCACTCTCAGAGGT
GGCCCTTGGGTTCATTTCCTTTTGGTTTACTCAGGACTCAT
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