EL492548

Overview
NameEL492548
Unique NameEL492548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length191
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_SINMW (ATP synthase subunit alpha OS=Sinorhizobium medicae (strain WSM419) GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = -3 
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     E + LYCVYVA+GQKRSTVAQ V++L E  AL+YSI+VAATASD
Sbjct:  184 LNQKAIHDNGP-EGDKLYCVYVAIGQKRSTVAQFVKVLEERGALQYSIIVAATASD 238
[Close]
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_RHISN (ATP synthase subunit alpha OS=Rhizobium sp. (strain NGR234) GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = -3 
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     E + LYCVYVA+GQKRSTVAQ V++L E  AL+YSI+VAATASD
Sbjct:  184 LNQKAIHDNGP-EGDKLYCVYVAIGQKRSTVAQFVKVLEERGALQYSIIVAATASD 238
[Close]
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_RHIME (ATP synthase subunit alpha OS=Rhizobium meliloti GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = -3 
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     E + LYCVYVA+GQKRSTVAQ V++L E  AL+YSI+VAATASD
Sbjct:  184 LNQKAIHDNGP-EGDKLYCVYVAIGQKRSTVAQFVKVLEERGALQYSIIVAATASD 238
[Close]
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_RAT (ATP synthase subunit alpha, mitochondrial OS=Rattus norvegicus GN=Atp5a1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 33/56 (58.93%), Postives = 46/56 (82.14%), Query Frame = -3 
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N   T E + LYC+YVA+GQKRSTVAQLV+ L++ +A++Y+I+V+ATASD
Sbjct:  227 INQKRFND-GTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASD 281
[Close]
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_MOUSE (ATP synthase subunit alpha, mitochondrial OS=Mus musculus GN=Atp5a1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 33/56 (58.93%), Postives = 46/56 (82.14%), Query Frame = -3 
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N   T E + LYC+YVA+GQKRSTVAQLV+ L++ +A++Y+I+V+ATASD
Sbjct:  227 INQKRFND-GTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASD 281
[Close]
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_METS4 (ATP synthase subunit alpha OS=Methylobacterium sp. (strain 4-46) GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = -3 
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  +   T E   LYCVYVAVGQKRSTVAQ V++L +  AL+YSI++AATASD
Sbjct:  184 LNQKPAH-EGTDEKAKLYCVYVAVGQKRSTVAQFVKVLEDNGALDYSIVIAATASD 238
[Close]
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_METRJ (ATP synthase subunit alpha OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = -3 
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  +     E   LYC+YVA+GQKRSTVAQ V++L +  ALEYSI++AATASD
Sbjct:  184 LNQKPGHTAGGDEKAKLYCIYVAIGQKRSTVAQFVKVLEDQGALEYSIVIAATASD 239
[Close]
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_METPB (ATP synthase subunit alpha OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = -3 
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  +   T E+  LYCVYVA+GQKRSTVAQ V++L +  ALEYSI++AATASD
Sbjct:  184 LNQKPAHS-GTDENAKLYCVYVAIGQKRSTVAQFVKVLEDQGALEYSIVIAATASD 238
[Close]
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_DROME (ATP synthase subunit alpha, mitochondrial OS=Drosophila melanogaster GN=blw PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = -3 
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N  A  ES+ LYC+YVA+GQKRSTVAQ+V+ L++  A+ YS++V+ATASD
Sbjct:  226 INQKRFN-EAQDESKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYSVIVSATASD 280
[Close]
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BRUSU (ATP synthase subunit alpha OS=Brucella suis GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = -3 
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     + + LYCVYVAVGQKRSTVAQ V++L E  ALEYSI+VAATASD
Sbjct:  184 LNQKPIHDNGP-DKDKLYCVYVAVGQKRSTVAQFVKVLEERGALEYSIVVAATASD 238
The following BLAST results are available for this feature:
BLAST of EL492548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
ATPA_SINMW6.880e-1262.50ATP synthase subunit alpha OS=Sinorhizobium medica... [more]
ATPA_RHISN6.880e-1262.50ATP synthase subunit alpha OS=Rhizobium sp. (strai... [more]
ATPA_RHIME6.880e-1262.50ATP synthase subunit alpha OS=Rhizobium meliloti G... [more]
ATPA_RAT6.880e-1258.93ATP synthase subunit alpha, mitochondrial OS=Rattu... [more]
ATPA_MOUSE6.880e-1258.93ATP synthase subunit alpha, mitochondrial OS=Mus m... [more]
ATPA_METS46.880e-1262.50ATP synthase subunit alpha OS=Methylobacterium sp.... [more]
ATPA_METRJ6.880e-1258.93ATP synthase subunit alpha OS=Methylobacterium rad... [more]
ATPA_METPB6.880e-1262.50ATP synthase subunit alpha OS=Methylobacterium pop... [more]
ATPA_DROME6.880e-1258.93ATP synthase subunit alpha, mitochondrial OS=Droso... [more]
ATPA_BRUSU6.880e-1264.29ATP synthase subunit alpha OS=Brucella suis GN=atp... [more]

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Properties
Property NameValue
Genbank descriptionC2931 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2931, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492548 ID=EL492548; Name=EL492548; organism=Citrus sinensis; type=EST; length=191bp
GACTGCGTAGTGATCCGAGGCGGTGGCTGCTACAAGAATGGAATATTCCA
AAGCATTCCCTTCTGAAAGAATTTGAACTAATTGTGCTACAGTTGAGCGT
TTTTGTCCAACCGCTACATAGACACAATACAATGTCTCACTCTCAGAGGT
GGCCCTTGGGTTCATTTCCTTTTGGTTTACTCAGGACTCAT
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