EL492548

Overview
NameEL492548
Unique NameEL492548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length191
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BRUSI (ATP synthase subunit alpha OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     + + LYCVYVAVGQKRSTVAQ V++L E  ALEYSI+VAATASD
Sbjct:  184 LNQKPIHDNGP-DKDKLYCVYVAVGQKRSTVAQFVKVLEERGALEYSIVVAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BRUO2 (ATP synthase subunit alpha OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     + + LYCVYVAVGQKRSTVAQ V++L E  ALEYSI+VAATASD
Sbjct:  184 LNQKPIHDNGP-DKDKLYCVYVAVGQKRSTVAQFVKVLEERGALEYSIVVAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BRUME (ATP synthase subunit alpha OS=Brucella melitensis GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     + + LYCVYVAVGQKRSTVAQ V++L E  ALEYSI+VAATASD
Sbjct:  184 LNQKPIHDNGP-DKDKLYCVYVAVGQKRSTVAQFVKVLEERGALEYSIVVAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BRUMB (ATP synthase subunit alpha OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     + + LYCVYVAVGQKRSTVAQ V++L E  ALEYSI+VAATASD
Sbjct:  184 LNQKPIHDNGP-DKDKLYCVYVAVGQKRSTVAQFVKVLEERGALEYSIVVAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BRUC2 (ATP synthase subunit alpha OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     + + LYCVYVAVGQKRSTVAQ V++L E  ALEYSI+VAATASD
Sbjct:  184 LNQKPIHDNGP-DKDKLYCVYVAVGQKRSTVAQFVKVLEERGALEYSIVVAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BRUAB (ATP synthase subunit alpha OS=Brucella abortus GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     + + LYCVYVAVGQKRSTVAQ V++L E  ALEYSI+VAATASD
Sbjct:  184 LNQKPIHDNGP-DKDKLYCVYVAVGQKRSTVAQFVKVLEERGALEYSIVVAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BRUA2 (ATP synthase subunit alpha OS=Brucella abortus (strain 2308) GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     + + LYCVYVAVGQKRSTVAQ V++L E  ALEYSI+VAATASD
Sbjct:  184 LNQKPIHDNGP-DKDKLYCVYVAVGQKRSTVAQFVKVLEERGALEYSIVVAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BRUA1 (ATP synthase subunit alpha OS=Brucella abortus (strain S19) GN=atpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     + + LYCVYVAVGQKRSTVAQ V++L E  ALEYSI+VAATASD
Sbjct:  184 LNQKPIHDNGP-DKDKLYCVYVAVGQKRSTVAQFVKVLEERGALEYSIVVAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BOVIN (ATP synthase subunit alpha, mitochondrial OS=Bos taurus GN=ATP5A1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 33/56 (58.93%), Postives = 46/56 (82.14%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N   T E + LYC+YVA+GQKRSTVAQLV+ L++ +A++Y+I+V+ATASD
Sbjct:  227 INQKRFND-GTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASD 281          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_ROSDO (ATP synthase subunit alpha OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.985e-12
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = -3
Query:   13 VNQKEMNPRA-TSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N  A   ES+ LYCVYVA+GQKRSTVAQLV+ L E  A+ YSI+VAATAS+
Sbjct:  184 LNQKSYNDAAGDDESKKLYCVYVAIGQKRSTVAQLVKKLEETGAINYSIVVAATASE 240          
The following BLAST results are available for this feature:
BLAST of EL492548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
ATPA_BRUSI6.880e-1264.29ATP synthase subunit alpha OS=Brucella suis (strai... [more]
ATPA_BRUO26.880e-1264.29ATP synthase subunit alpha OS=Brucella ovis (strai... [more]
ATPA_BRUME6.880e-1264.29ATP synthase subunit alpha OS=Brucella melitensis ... [more]
ATPA_BRUMB6.880e-1264.29ATP synthase subunit alpha OS=Brucella melitensis ... [more]
ATPA_BRUC26.880e-1264.29ATP synthase subunit alpha OS=Brucella canis (stra... [more]
ATPA_BRUAB6.880e-1264.29ATP synthase subunit alpha OS=Brucella abortus GN=... [more]
ATPA_BRUA26.880e-1264.29ATP synthase subunit alpha OS=Brucella abortus (st... [more]
ATPA_BRUA16.880e-1264.29ATP synthase subunit alpha OS=Brucella abortus (st... [more]
ATPA_BOVIN6.880e-1258.93ATP synthase subunit alpha, mitochondrial OS=Bos t... [more]
ATPA_ROSDO8.985e-1264.91ATP synthase subunit alpha OS=Roseobacter denitrif... [more]

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Properties
Property NameValue
Genbank descriptionC2931 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2931, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492548 ID=EL492548; Name=EL492548; organism=Citrus sinensis; type=EST; length=191bp
GACTGCGTAGTGATCCGAGGCGGTGGCTGCTACAAGAATGGAATATTCCA
AAGCATTCCCTTCTGAAAGAATTTGAACTAATTGTGCTACAGTTGAGCGT
TTTTGTCCAACCGCTACATAGACACAATACAATGTCTCACTCTCAGAGGT
GGCCCTTGGGTTCATTTCCTTTTGGTTTACTCAGGACTCAT
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