EL492548

Overview
NameEL492548
Unique NameEL492548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length191
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_RHOSK (ATP synthase subunit alpha OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=atpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.985e-12
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = -3
Query:   13 VNQKEMNPRA-TSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N  A   ES+ LYC+YVA+GQKRSTVAQLV+ L E  A++Y+++VAATASD
Sbjct:  184 LNQKSYNEAAGDDESKKLYCIYVAIGQKRSTVAQLVKKLEETGAIDYTLVVAATASD 240          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_RHOS4 (ATP synthase subunit alpha OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.985e-12
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = -3
Query:   13 VNQKEMNPRA-TSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N  A   ES+ LYC+YVA+GQKRSTVAQLV+ L E  A++Y+++VAATASD
Sbjct:  184 LNQKSYNEAAGDDESKKLYCIYVAIGQKRSTVAQLVKKLEETGAIDYTLVVAATASD 240          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_METNO (ATP synthase subunit alpha OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.985e-12
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  +   + E   LYCVYVAVGQKRSTVAQ V++L +  ALEYSI++AATASD
Sbjct:  184 LNQKPAH-EGSDEKAKLYCVYVAVGQKRSTVAQFVKVLEDNGALEYSIVIAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_BARBK (ATP synthase subunit alpha OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=atpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.985e-12
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = -3
Query:   13 VNQKEMNPR-ATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  +   A S+ + +YC+YVA+GQKRSTVAQ V++L E  AL+YSI+VAATASD
Sbjct:  184 LNQKPFHENEAGSDQDKVYCIYVAIGQKRSTVAQFVKVLEERGALDYSIIVAATASD 240          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA1_RHOS1 (ATP synthase subunit alpha 1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpA1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.985e-12
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = -3
Query:   13 VNQKEMNPRA-TSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N  A   ES+ LYC+YVA+GQKRSTVAQLV+ L E  A++Y+++VAATASD
Sbjct:  184 LNQKSYNEAAGDDESKKLYCIYVAIGQKRSTVAQLVKKLEETGAIDYTLVVAATASD 240          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_METEP (ATP synthase subunit alpha OS=Methylobacterium extorquens (strain PA1) GN=atpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  +  A  E+  LYCVYVA+GQKRSTVAQ V++L +  ALEYSI++AATASD
Sbjct:  184 LNQKSAHAGA-DENAKLYCVYVAIGQKRSTVAQFVKVLEDQGALEYSIVIAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_METC4 (ATP synthase subunit alpha OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=atpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  +  A  E+  LYCVYVA+GQKRSTVAQ V++L +  ALEYSI++AATASD
Sbjct:  184 LNQKSAHAGA-DENAKLYCVYVAIGQKRSTVAQFVKVLEDQGALEYSIVIAATASD 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_PHEZH (ATP synthase subunit alpha OS=Phenylobacterium zucineum (strain HLK1) GN=atpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.533e-11
Identity = 33/56 (58.93%), Postives = 46/56 (82.14%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK++N     ES+ LYC+YVA+GQKRSTVAQ+V+ L E  AL+Y+I+V+ATAS+
Sbjct:  186 LNQKQVNAGG-DESQKLYCIYVAIGQKRSTVAQIVKTLEERGALDYTIVVSATASE 240          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_GLUDA (ATP synthase subunit alpha OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=atpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.533e-11
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            V QK +N     + ++LYC+YVA+GQKRSTVAQLV+ L E  A+EYSI+VAATASD
Sbjct:  187 VAQKSVNALG-DDKKSLYCIYVAIGQKRSTVAQLVRTLEETGAMEYSIVVAATASD 241          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_AGRT5 (ATP synthase subunit alpha OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=atpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.533e-11
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK ++     + + LYCVYVA+GQKRSTVAQ V++L E  AL+YSI+VAATASD
Sbjct:  184 LNQKAIHDNGP-DGDKLYCVYVAIGQKRSTVAQFVKVLEERGALQYSIIVAATASD 238          
The following BLAST results are available for this feature:
BLAST of EL492548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
ATPA_RHOSK8.985e-1261.40ATP synthase subunit alpha OS=Rhodobacter sphaeroi... [more]
ATPA_RHOS48.985e-1261.40ATP synthase subunit alpha OS=Rhodobacter sphaeroi... [more]
ATPA_METNO8.985e-1262.50ATP synthase subunit alpha OS=Methylobacterium nod... [more]
ATPA_BARBK8.985e-1259.65ATP synthase subunit alpha OS=Bartonella bacillifo... [more]
ATPA1_RHOS18.985e-1261.40ATP synthase subunit alpha 1 OS=Rhodobacter sphaer... [more]
ATPA_METEP1.173e-1162.50ATP synthase subunit alpha OS=Methylobacterium ext... [more]
ATPA_METC41.173e-1162.50ATP synthase subunit alpha OS=Methylobacterium chl... [more]
ATPA_PHEZH1.533e-1158.93ATP synthase subunit alpha OS=Phenylobacterium zuc... [more]
ATPA_GLUDA1.533e-1162.50ATP synthase subunit alpha OS=Gluconacetobacter di... [more]
ATPA_AGRT51.533e-1160.71ATP synthase subunit alpha OS=Agrobacterium tumefa... [more]

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Properties
Property NameValue
Genbank descriptionC2931 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2931, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492548 ID=EL492548; Name=EL492548; organism=Citrus sinensis; type=EST; length=191bp
GACTGCGTAGTGATCCGAGGCGGTGGCTGCTACAAGAATGGAATATTCCA
AAGCATTCCCTTCTGAAAGAATTTGAACTAATTGTGCTACAGTTGAGCGT
TTTTGTCCAACCGCTACATAGACACAATACAATGTCTCACTCTCAGAGGT
GGCCCTTGGGTTCATTTCCTTTTGGTTTACTCAGGACTCAT
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