EL492548

Overview
NameEL492548
Unique NameEL492548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length191
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_RHOS5 (ATP synthase subunit alpha OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = -3
Query:   13 VNQKEMNPRA-TSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N  A   ES+ LYC+YVA+GQKRSTVAQLV+ L E  A+ Y+++VAATASD
Sbjct:  184 LNQKSYNEAAGDDESKKLYCIYVAIGQKRSTVAQLVKKLEETGAIAYTLVVAATASD 240          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_RHOBL (ATP synthase subunit alpha OS=Rhodopseudomonas blastica GN=atpA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = -3
Query:   13 VNQKEMNPRA-TSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N  A   ES+ LYCVYVA+GQKRSTVAQLV+ L E  A+ Y+++VAATASD
Sbjct:  184 LNQKVYNDAAGDDESKKLYCVYVAIGQKRSTVAQLVKKLEETGAMAYTVVVAATASD 240          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_PONAB (ATP synthase subunit alpha, mitochondrial OS=Pongo abelii GN=ATP5A1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11
Identity = 32/56 (57.14%), Postives = 46/56 (82.14%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N   + E + LYC+YVA+GQKRSTVAQLV+ L++ +A++Y+I+V+ATASD
Sbjct:  227 INQKRFND-GSDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASD 281          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_PANTR (ATP synthase subunit alpha, mitochondrial OS=Pan troglodytes GN=ATP5A1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11
Identity = 32/56 (57.14%), Postives = 46/56 (82.14%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N   + E + LYC+YVA+GQKRSTVAQLV+ L++ +A++Y+I+V+ATASD
Sbjct:  227 INQKRFND-GSDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASD 281          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_HUMAN (ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11
Identity = 32/56 (57.14%), Postives = 46/56 (82.14%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N   + E + LYC+YVA+GQKRSTVAQLV+ L++ +A++Y+I+V+ATASD
Sbjct:  227 INQKRFND-GSDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASD 281          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_CAUSK (ATP synthase subunit alpha OS=Caulobacter sp. (strain K31) GN=atpA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK  N   T ES  LYCVYVA+GQKRSTVAQ+V+ L E  ALEY+I+V A+AS+
Sbjct:  185 LNQKAANA-GTDESAKLYCVYVAIGQKRSTVAQIVKTLEEHGALEYTIVVVASASE 239          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_ZYMMO (ATP synthase subunit alpha OS=Zymomonas mobilis GN=atpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.459e-11
Identity = 32/56 (57.14%), Postives = 46/56 (82.14%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK++N   +  ++ L+C+YVA+GQKRSTVAQ+V+ L E  A+EYSI+VAATAS+
Sbjct:  184 INQKQVNS-GSDNTKKLFCIYVAIGQKRSTVAQIVRQLEEMGAMEYSIVVAATASE 238          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_PELUB (ATP synthase subunit alpha OS=Pelagibacter ubique GN=atpA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.606e-11
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQK++N  +  E + LYC+YVA+GQKRSTV Q+ + L E  A+EY+ +VAATASD
Sbjct:  185 INQKKIN-ESGDEKQKLYCIYVAIGQKRSTVRQIQKTLEEAGAMEYTTIVAATASD 239          
BLAST of EL492548 vs. ExPASy Swiss-Prot
Match: ATPA_PARDP (ATP synthase subunit alpha OS=Paracoccus denitrificans (strain Pd 1222) GN=atpA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.934e-11
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = -3
Query:   13 VNQKEMNPRATSESETLYCVYVAVGQKRSTVAQLVQILSEGNALEYSILVAATASD 180
            +NQ   N R     +TL+C+YVAVGQKRSTVAQLV+ L E  A+ Y+ +VAATASD
Sbjct:  184 LNQANYNGREADGMKTLHCIYVAVGQKRSTVAQLVKKLEETGAMAYTTVVAATASD 239          
The following BLAST results are available for this feature:
BLAST of EL492548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
ATPA_RHOS52.002e-1161.40ATP synthase subunit alpha OS=Rhodobacter sphaeroi... [more]
ATPA_RHOBL2.002e-1163.16ATP synthase subunit alpha OS=Rhodopseudomonas bla... [more]
ATPA_PONAB2.002e-1157.14ATP synthase subunit alpha, mitochondrial OS=Pongo... [more]
ATPA_PANTR2.002e-1157.14ATP synthase subunit alpha, mitochondrial OS=Pan t... [more]
ATPA_HUMAN2.002e-1157.14ATP synthase subunit alpha, mitochondrial OS=Homo ... [more]
ATPA_CAUSK2.614e-1162.50ATP synthase subunit alpha OS=Caulobacter sp. (str... [more]
ATPA_ZYMMO4.459e-1157.14ATP synthase subunit alpha OS=Zymomonas mobilis GN... [more]
ATPA_PELUB7.606e-1155.36ATP synthase subunit alpha OS=Pelagibacter ubique ... [more]
ATPA_PARDP9.934e-1158.93ATP synthase subunit alpha OS=Paracoccus denitrifi... [more]

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Properties
Property NameValue
Genbank descriptionC2931 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2931, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492548 ID=EL492548; Name=EL492548; organism=Citrus sinensis; type=EST; length=191bp
GACTGCGTAGTGATCCGAGGCGGTGGCTGCTACAAGAATGGAATATTCCA
AAGCATTCCCTTCTGAAAGAATTTGAACTAATTGTGCTACAGTTGAGCGT
TTTTGTCCAACCGCTACATAGACACAATACAATGTCTCACTCTCAGAGGT
GGCCCTTGGGTTCATTTCCTTTTGGTTTACTCAGGACTCAT
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