EL492546

Overview
NameEL492546
Unique NameEL492546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length251
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.670e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 3 
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 128
            SV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:  212 SVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249
[Close]
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.670e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 3 
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 128
            SV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:  212 SVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249
[Close]
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.670e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 3 
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 128
            SV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:  212 SVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249
[Close]
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.670e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 3 
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 128
            SV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:  212 SVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249
[Close]
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.670e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 3 
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 128
            SV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:  212 SVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249
[Close]
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_HUMAN (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.670e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 3 
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 128
            SV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:  212 SVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249
[Close]
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.670e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 3 
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 128
            SV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:  212 SVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249
[Close]
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.670e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 3 
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 128
            SV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:  212 SVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249
[Close]
BLAST of EL492546 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.670e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 3 
Query:   15 SVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 128
            SV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:  212 SVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249
The following BLAST results are available for this feature:
BLAST of EL492546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
TPIS_PONAB5.670e-1178.95Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR5.670e-1178.95Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]
TPIS_MOUSE5.670e-1178.95Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_MACMU5.670e-1178.95Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA5.670e-1178.95Triosephosphate isomerase OS=Macaca fascicularis G... [more]
TPIS_HUMAN5.670e-1178.95Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]
TPIS_GORGO5.670e-1178.95Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_CANFA5.670e-1178.95Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPIS_BOVIN5.670e-1178.95Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]

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Properties
Property NameValue
Genbank descriptionC2881 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2881, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492546 ID=EL492546; Name=EL492546; organism=Citrus sinensis; type=EST; length=251bp
GACTGCGCTAGTGATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCA
CAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGA
GTTCATTGACATCATCAAATCTGCTGAGCTGAAGTAAAATTCTTGAGCTT
TATTTCAAGCGCAGTTTGCTGATGAAGTATTTACTGTTTGTGGATATATA
GAATACGTTTGGTATAATTTCAGAATTACTTTTGTTTTACTCAGGACTCA
T
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