EL492543

Overview
NameEL492543
Unique NameEL492543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHOS5 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsP PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.295e-18
Identity = 45/78 (57.69%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +D   R+ +N +RV+YWLS GAQP+D V R L  AGL
Sbjct:    5 IRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNVERVQYWLSQGAQPTDRVARFLEAAGL 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_OLICO (30S ribosomal protein S16 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rpsP PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.295e-18
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            VVIRLAR G K +P Y V+ ADSR PRDG+ +E LGY+NPL  +D   R+ L+ D+VK WL+ GAQPSD V R L  AG+
Sbjct:    3 VVIRLARAGTKKRPVYHVVVADSRFPRDGRFIERLGYFNPLLPKDNEARLKLDMDKVKAWLAKGAQPSDRVMRFLDAAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_NITHX (30S ribosomal protein S16 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsP PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.295e-18
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            VVIRLAR G K +P Y V+ ADSR PRDG+ +E LGY+NPL  +D   R+ ++ D+VK WL+ GAQPSD V R L  AG+
Sbjct:    3 VVIRLARAGTKKRPVYHVVVADSRYPRDGRFIERLGYFNPLMPKDNADRLKIDLDKVKAWLAKGAQPSDRVARFLDAAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_SINMW (30S ribosomal protein S16 OS=Sinorhizobium medicae (strain WSM419) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.209e-18
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP 258
            IRLAR G K +P+Y+++ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +RV++W+  GAQP+D V R L +AGL   P
Sbjct:    5 IRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQHWIDQGAQPTDRVLRFLDQAGLAKRP 86          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHOS4 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.209e-18
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +D   R+ +N +RV+YWL+ GAQP+D V R L  AGL
Sbjct:    5 IRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQGAQPTDRVARFLEAAGL 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHOS1 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.209e-18
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +D   R+ +N +RV+YWL+ GAQP+D V R L  AGL
Sbjct:    5 IRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQGAQPTDRVARFLEAAGL 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_AGRVS (30S ribosomal protein S16 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.209e-18
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +P+Y+++ AD+RSPRDG+ LE +G +NP+ G+D  KR+ LN DR+K W++ GAQP+D V + L  AGL
Sbjct:    5 IRLARGGSKKRPYYQIVIADARSPRDGRFLEKVGSWNPMLGKDNEKRVELNADRIKEWIAKGAQPTDRVLKFLAEAGL 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_MAGSA (30S ribosomal protein S16 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.885e-18
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP 258
            IRL+R G K +PFY+++ AD+R+PRDG+ +E +G YNP+   D G+R  L+ DRVK+WLSVGAQP+D + R     GL+  P
Sbjct:    5 IRLSRGGAKKRPFYKIVVADARAPRDGRFIEKVGTYNPMLPNDNGQRWILDEDRVKHWLSVGAQPTDRLVRFFADKGLVAKP 86          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_ACICJ (30S ribosomal protein S16 OS=Acidiphilium cryptum (strain JF-5) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.885e-18
Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP 258
            IRLAR G K +PFY ++ ADSRSPRDGK +E +G YNP+   D   R+ L  DRV +WLS GAQ +D V R + +AGL P P
Sbjct:    5 IRLARAGAKKRPFYHIVVADSRSPRDGKFIERIGTYNPMLPADHEDRIRLVTDRVTHWLSQGAQATDRVARFIGKAGLAPMP 86          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHISN (30S ribosomal protein S16 OS=Rhizobium sp. (strain NGR234) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.768e-18
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP 258
            IRLAR G K +P+Y+++ AD+RSPRDG+ LE +G +NP+  +D  KR+ LN +RV +W++ GAQP+D V R L +AGL   P
Sbjct:    5 IRLARGGSKKRPYYQIVVADARSPRDGRFLEKIGSWNPMLSKDDEKRIELNAERVSHWIAQGAQPTDRVLRFLDQAGLAKRP 86          
The following BLAST results are available for this feature:
BLAST of EL492543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_RHOS51.295e-1857.6930S ribosomal protein S16 OS=Rhodobacter sphaeroid... [more]
RS16_OLICO1.295e-1857.5030S ribosomal protein S16 OS=Oligotropha carboxido... [more]
RS16_NITHX1.295e-1856.2530S ribosomal protein S16 OS=Nitrobacter hamburgen... [more]
RS16_SINMW2.209e-1852.4430S ribosomal protein S16 OS=Sinorhizobium medicae... [more]
RS16_RHOS42.209e-1856.4130S ribosomal protein S16 OS=Rhodobacter sphaeroid... [more]
RS16_RHOS12.209e-1856.4130S ribosomal protein S16 OS=Rhodobacter sphaeroid... [more]
RS16_AGRVS2.209e-1853.8530S ribosomal protein S16 OS=Agrobacterium vitis (... [more]
RS16_MAGSA2.885e-1851.2230S ribosomal protein S16 OS=Magnetospirillum magn... [more]
RS16_ACICJ2.885e-1854.8830S ribosomal protein S16 OS=Acidiphilium cryptum ... [more]
RS16_RHISN3.768e-1851.2230S ribosomal protein S16 OS=Rhizobium sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionC2841 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2841, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492543 ID=EL492543; Name=EL492543; organism=Citrus sinensis; type=EST; length=259bp
GACTGCGTAGTGATCCGATTGGCGAGATTCGGATGTAAGAACAAACCTTT
CTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGCAAGCATC
TTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACTGCGGCAAA
AGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTGC
CCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAGGGCAGGGTTACTAC
CCCCACCTC
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