EL492543

Overview
NameEL492543
Unique NameEL492543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_NOVAD (30S ribosomal protein S16 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rpsP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.768e-18
Identity = 41/80 (51.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            V +RL+R G K +P+Y+++ ++SR+PRDGK+LE +G YNPL  +D   R+ L  DRV+YW+ VGAQP+D V R+L +AG+
Sbjct:    3 VSMRLSRGGSKKRPYYKIVVSNSRAPRDGKYLEQVGTYNPLLAKDDENRVRLIEDRVRYWIGVGAQPTDRVARMLDKAGI 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_ZYMMO (30S ribosomal protein S16 OS=Zymomonas mobilis GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.921e-18
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL+R G K +PFYR++ A+SRSPRDG  +E +G YNP   +D   R+ ++ DR ++WLSVGAQP+D V R L  AGLL
Sbjct:    3 VSIRLSRGGAKRRPFYRIVIANSRSPRDGSFIEKIGSYNPQLPKDNENRVIVDLDRARHWLSVGAQPTDRVARFLDAAGLL 83          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHORT (30S ribosomal protein S16 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.921e-18
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +PFYR++ ADSRSPRDG+ +E LG ++P+  +D  +R+ L  +RVKYWL VGA PSD V R L  +GL
Sbjct:    5 IRLARGGAKKRPFYRIVVADSRSPRDGRFIEKLGTFDPMLPRDHERRVVLKDERVKYWLGVGALPSDRVARFLGLSGL 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_JANSC (30S ribosomal protein S16 OS=Jannaschia sp. (strain CCS1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.921e-18
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 252
            IRLAR G K +PFYR++A+DSR PRDG+ +E LG YNPL  +D   R+ ++ +RV++WL  GAQP+D + R L  AG  P
Sbjct:    5 IRLARGGSKKRPFYRIVASDSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDMERVQHWLDQGAQPTDRISRFLEAAGHTP 84          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_BRASO (30S ribosomal protein S16 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.921e-18
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            VVIRLAR G K +P Y V+ ADSR PRDG+ +E LGY+NPL  +D   R+ L+ ++VK WL+ GAQPSD V R L  AG+
Sbjct:    3 VVIRLARAGTKKRPVYHVVVADSRFPRDGRFIERLGYFNPLMPKDNEARLKLDMEKVKGWLAKGAQPSDRVARFLDTAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_BRASB (30S ribosomal protein S16 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsP PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.921e-18
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            VVIRLAR G K +P Y V+ ADSR PRDG+ +E LGY+NPL  +D   R+ L+ ++VK WL+ GAQPSD V R L  AG+
Sbjct:    3 VVIRLARAGTKKRPVYHVVVADSRFPRDGRFIERLGYFNPLMPKDNEARLKLDMEKVKGWLAKGAQPSDRVARFLDAAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHOPB (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.394e-18
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            VVIRLAR G K +P Y V+ ADSR PRDG+ +E LG++NPL  +D   R+ L+ D+VK W++ GAQPSD V R L  AG+
Sbjct:    3 VVIRLARAGTKKRPVYHVVVADSRFPRDGRFIERLGHFNPLLPKDSEARLKLDLDKVKAWVAKGAQPSDRVARFLDAAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHOP5 (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.394e-18
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            VVIRLAR G K +P Y V+ ADSR PRDG+ +E LG++NPL  +D   R+ L+ D+VK W++ GAQPSD V R L  AG++
Sbjct:    3 VVIRLARAGTKKRPVYHVVVADSRFPRDGRFIERLGHFNPLLPKDNEARLKLDLDKVKAWVAKGAQPSDRVARFLDAAGVM 83          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHILO (30S ribosomal protein S16 OS=Rhizobium loti GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.394e-18
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +P+Y V+ AD+RSPRDG+ +E LG +NPL  +D G+R+ ++ DRVK+WLS GAQP+D V R L  AGL
Sbjct:    5 IRLARAGSKKRPYYHVVVADARSPRDGRFIESLGSWNPLLPKD-GERVKVDADRVKHWLSHGAQPTDRVLRFLDEAGL 81          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHIEC (30S ribosomal protein S16 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.394e-18
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +P+Y V+ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +R+K+WL  GAQP+D V R L  AG+
Sbjct:    5 IRLARGGSKKRPYYHVVLADARSPRDGRFLENLGSWNPMLAKDDEKRVQLNAERIKHWLDNGAQPTDRVLRFLNEAGV 82          
The following BLAST results are available for this feature:
BLAST of EL492543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_NOVAD3.768e-1851.2530S ribosomal protein S16 OS=Novosphingobium aroma... [more]
RS16_ZYMMO4.921e-1854.3230S ribosomal protein S16 OS=Zymomonas mobilis GN=... [more]
RS16_RHORT4.921e-1856.4130S ribosomal protein S16 OS=Rhodospirillum rubrum... [more]
RS16_JANSC4.921e-1852.5030S ribosomal protein S16 OS=Jannaschia sp. (strai... [more]
RS16_BRASO4.921e-1856.2530S ribosomal protein S16 OS=Bradyrhizobium sp. (s... [more]
RS16_BRASB4.921e-1856.2530S ribosomal protein S16 OS=Bradyrhizobium sp. (s... [more]
RS16_RHOPB8.394e-1855.0030S ribosomal protein S16 OS=Rhodopseudomonas palu... [more]
RS16_RHOP58.394e-1854.3230S ribosomal protein S16 OS=Rhodopseudomonas palu... [more]
RS16_RHILO8.394e-1857.6930S ribosomal protein S16 OS=Rhizobium loti GN=rps... [more]
RS16_RHIEC8.394e-1855.1330S ribosomal protein S16 OS=Rhizobium etli (strai... [more]

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Properties
Property NameValue
Genbank descriptionC2841 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2841, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492543 ID=EL492543; Name=EL492543; organism=Citrus sinensis; type=EST; length=259bp
GACTGCGTAGTGATCCGATTGGCGAGATTCGGATGTAAGAACAAACCTTT
CTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGCAAGCATC
TTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACTGCGGCAAA
AGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTGC
CCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAGGGCAGGGTTACTAC
CCCCACCTC
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