EL492543

Overview
NameEL492543
Unique NameEL492543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHIE6 (30S ribosomal protein S16 OS=Rhizobium etli (strain CIAT 652) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.394e-18
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +P+Y V+ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +R+K+WL  GAQP+D V R L  AG+
Sbjct:    5 IRLARGGSKKRPYYHVVLADARSPRDGRFLENLGSWNPMLAKDDEKRVQLNAERIKHWLDNGAQPTDRVLRFLNEAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_BRAJA (30S ribosomal protein S16 OS=Bradyrhizobium japonicum GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.394e-18
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            VVIRLAR G K +P Y V+ ADSR PRDG+ +E LGY+NPL  +D   R+ L+ ++VK W++ GAQPSD V R L  AG+
Sbjct:    3 VVIRLARAGTKKRPVYHVVVADSRFPRDGRFIERLGYFNPLLPKDNEARLKLDMEKVKAWVAKGAQPSDRVSRFLDAAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_AZOC5 (30S ribosomal protein S16 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.394e-18
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            IRLAR G K +P+YR++ AD+RSPRDG+ +E +G +NPL  +D  +R+ L+ ++ K WL  GAQP+D V R L  AGLL
Sbjct:    5 IRLARGGAKKRPYYRIVVADARSPRDGRFIEKIGTFNPLLAKDAAERVTLDTEKAKAWLEKGAQPTDRVARFLDAAGLL 83          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_PARL1 (30S ribosomal protein S16 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.096e-17
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +PFYRV+ AD+RSPRDG+ +E +G +NPL  +D  +R+ ++ +R K+WLSVGA P+D V R L  AG+
Sbjct:    5 IRLARGGAKKRPFYRVVIADTRSPRDGRFIEKIGTFNPLLPKDNAERIKVDIERAKHWLSVGALPTDRVARFLDDAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_AGRRK (30S ribosomal protein S16 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.096e-17
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +P+Y V+ AD+RSPRDG+ LE +G +NP+  +D  KR+ L+ DR+K+WL  GAQP+D V R L  AG+
Sbjct:    5 IRLARGGSKKRPYYHVVIADARSPRDGRFLEKVGSWNPMLAKDDAKRVELDADRIKHWLDNGAQPTDRVLRFLDEAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_SILST (30S ribosomal protein S16 OS=Silicibacter sp. (strain TM1040) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.432e-17
Identity = 41/78 (52.56%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ++++ WL  GAQP+D V R+L  AG+
Sbjct:    5 IRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDIEKIQAWLDKGAQPTDRVARMLEAAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RICBR (30S ribosomal protein S16 OS=Rickettsia bellii (strain RML369-C) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.432e-17
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPP 255
            V IRLAR G K +PFYRV+ A++ +PRDG  LE +G YNP+  +D  +R+ L  DRV+YWL  GA+P+D V R + +AG+  P
Sbjct:    3 VKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYNPMLAKDSNERVVLKADRVEYWLKSGAKPTDRVARFIEQAGIALP 85          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RICB8 (30S ribosomal protein S16 OS=Rickettsia bellii (strain OSU 85-389) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.432e-17
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPP 255
            V IRLAR G K +PFYRV+ A++ +PRDG  LE +G YNP+  +D  +R+ L  DRV+YWL  GA+P+D V R + +AG+  P
Sbjct:    3 VKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYNPMLAKDSNERVVLKADRVEYWLKSGAKPTDRVARFIEQAGIALP 85          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHILW (30S ribosomal protein S16 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.432e-17
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +P+Y V+ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +R+K+W+  GAQP+D V R L  AG+
Sbjct:    5 IRLARGGSKKRPYYHVVLADARSPRDGRFLENLGSWNPMLAKDDEKRVQLNAERIKHWIENGAQPTDRVLRFLDEAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHIL3 (30S ribosomal protein S16 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rpsP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.432e-17
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +P+Y V+ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +R+K+W+  GAQP+D V R L  AG+
Sbjct:    5 IRLARGGSKKRPYYHVVLADARSPRDGRFLENLGSWNPMLAKDDEKRVQLNAERIKHWIEHGAQPTDRVLRFLDEAGV 82          
The following BLAST results are available for this feature:
BLAST of EL492543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_RHIE68.394e-1855.1330S ribosomal protein S16 OS=Rhizobium etli (strai... [more]
RS16_BRAJA8.394e-1855.0030S ribosomal protein S16 OS=Bradyrhizobium japoni... [more]
RS16_AZOC58.394e-1851.9030S ribosomal protein S16 OS=Azorhizobium caulinod... [more]
RS16_PARL11.096e-1753.8530S ribosomal protein S16 OS=Parvibaculum lavament... [more]
RS16_AGRRK1.096e-1753.8530S ribosomal protein S16 OS=Agrobacterium radioba... [more]
RS16_SILST1.432e-1752.5630S ribosomal protein S16 OS=Silicibacter sp. (str... [more]
RS16_RICBR1.432e-1750.6030S ribosomal protein S16 OS=Rickettsia bellii (st... [more]
RS16_RICB81.432e-1750.6030S ribosomal protein S16 OS=Rickettsia bellii (st... [more]
RS16_RHILW1.432e-1753.8530S ribosomal protein S16 OS=Rhizobium leguminosar... [more]
RS16_RHIL31.432e-1753.8530S ribosomal protein S16 OS=Rhizobium leguminosar... [more]

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Properties
Property NameValue
Genbank descriptionC2841 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2841, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492543 ID=EL492543; Name=EL492543; organism=Citrus sinensis; type=EST; length=259bp
GACTGCGTAGTGATCCGATTGGCGAGATTCGGATGTAAGAACAAACCTTT
CTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGCAAGCATC
TTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACTGCGGCAAA
AGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTGC
CCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAGGGCAGGGTTACTAC
CCCCACCTC
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