EL492543

Overview
NameEL492543
Unique NameEL492543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_XANP2 (30S ribosomal protein S16 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.870e-17
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            IRLAR G K +P+YR++ AD+RSPRDG+ +E +G +NPL  +D   R+ L+ D+ K WL  GAQP+D V R L  AGL+
Sbjct:    5 IRLARGGAKKRPYYRIVIADARSPRDGRFIEKIGTFNPLLAKDAENRVVLDADKAKAWLEKGAQPTDRVARFLDAAGLM 83          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHOCS (30S ribosomal protein S16 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.870e-17
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP 258
            V IRL+R G K +PFY ++ A+SR+PRDG  +E +G YNP+   D  +R+ L  DR+K WL+ GAQP+D V R L +A L+P P
Sbjct:    3 VKIRLSRGGAKKRPFYSIVVANSRAPRDGDFIEKVGTYNPMVPHDHPERVVLQEDRIKEWLAKGAQPTDRVARFLGKANLIPMP 86          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_PARDP (30S ribosomal protein S16 OS=Paracoccus denitrificans (strain Pd 1222) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.870e-17
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +P Y ++A+DSR PRDG+ +E LG YNPL  +D   R+ +N +RV+YWL  GAQP+D V R L  AG+
Sbjct:    5 IRLARGGSKKRPHYAIVASDSRMPRDGRFIEKLGTYNPLLPKDSEDRIKMNLERVQYWLGQGAQPTDRVARFLEAAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_GLUDA (30S ribosomal protein S16 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.442e-17
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP 258
            IRLAR G K +P+Y ++ ADSRSPRDG+ +E +G YNP+   D   R+ L  +R+ +WLS GA P+D V R L  AGL P P
Sbjct:    5 IRLARAGAKKRPYYHIVIADSRSPRDGRFIEKVGAYNPMLPSDHADRVRLVNERITHWLSQGALPTDRVARFLGNAGLAPKP 86          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RT16_PONAB (28S ribosomal protein S16, mitochondrial OS=Pongo abelii GN=MRPS16 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.190e-17
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 252
            + IRLA  GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP     K + LN DR+++W+  GA  S P++++L  AG  P
Sbjct:   17 LTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLAGFFP 98          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RT16_HUMAN (28S ribosomal protein S16, mitochondrial OS=Homo sapiens GN=MRPS16 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.190e-17
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 252
            + IRLA  GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP     K + LN DR+++W+  GA  S P++++L  AG  P
Sbjct:   17 LTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLAGFFP 98          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_EHRRG (30S ribosomal protein S16 OS=Ehrlichia ruminantium (strain Gardel) GN=rpsP PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.190e-17
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPV 219
            V IRLARFG K +PFYRV+ ADSR  RDG+ +E+LG+YNP+  ++    + +  DR+KYWLSVGAQP++ +
Sbjct:    3 VKIRLARFGAKKRPFYRVVVADSRVARDGRFIELLGFYNPMLPKEHPSFLKVKIDRLKYWLSVGAQPTERI 73          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRPZ (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.166e-17
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRPM (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M28 GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.166e-17
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRPG (30S ribosomal protein S16 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.166e-17
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  DRV  WLS GAQPSD V+ IL +AG++
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QITIKEDRVLEWLSKGAQPSDTVRNILSKAGVM 80          
The following BLAST results are available for this feature:
BLAST of EL492543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_XANP21.870e-1751.9030S ribosomal protein S16 OS=Xanthobacter autotrop... [more]
RS16_RHOCS1.870e-1750.0030S ribosomal protein S16 OS=Rhodospirillum centen... [more]
RS16_PARDP1.870e-1753.8530S ribosomal protein S16 OS=Paracoccus denitrific... [more]
RS16_GLUDA2.442e-1751.2230S ribosomal protein S16 OS=Gluconacetobacter dia... [more]
RT16_PONAB3.190e-1746.3428S ribosomal protein S16, mitochondrial OS=Pongo ... [more]
RT16_HUMAN3.190e-1746.3428S ribosomal protein S16, mitochondrial OS=Homo s... [more]
RS16_EHRRG3.190e-1754.9330S ribosomal protein S16 OS=Ehrlichia ruminantium... [more]
RS16_STRPZ4.166e-1753.0930S ribosomal protein S16 OS=Streptococcus pyogene... [more]
RS16_STRPM4.166e-1753.0930S ribosomal protein S16 OS=Streptococcus pyogene... [more]
RS16_STRPG4.166e-1753.0930S ribosomal protein S16 OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionC2841 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2841, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492543 ID=EL492543; Name=EL492543; organism=Citrus sinensis; type=EST; length=259bp
GACTGCGTAGTGATCCGATTGGCGAGATTCGGATGTAAGAACAAACCTTT
CTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGCAAGCATC
TTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACTGCGGCAAA
AGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTGC
CCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAGGGCAGGGTTACTAC
CCCCACCTC
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