EL492543

Overview
NameEL492543
Unique NameEL492543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_DEHE1 (30S ribosomal protein S16 OS=Dehalococcoides ethenogenes (strain 195) GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.089e-12
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            IRL R G   KP YR++  ++RSPRD  + +++G YNP+   +    + +N ++  YW+  GAQP+D V R+L +AG++
Sbjct:    4 IRLTRIGAPKKPCYRIIVTEARSPRDATYTDLVGTYNPMTNPE---TVVINAEKALYWIGKGAQPTDTVARLLKKAGVV 79          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_BORGA (30S ribosomal protein S16 OS=Borrelia garinii GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.089e-12
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            V IRL R G K +P+YR++  +S SPRDG+ +E LGYY+P+  Q   K++ +  DR+K W+S GA  SD V+ +L +  L
Sbjct:    3 VRIRLKRMGAKKRPYYRIVVMNSASPRDGRAIEELGYYHPVEKQ---KQIKIKEDRMKDWISKGAILSDTVKMLLNKNNL 79          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_BACSU (30S ribosomal protein S16 OS=Bacillus subtilis GN=rpsP PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.089e-12
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K  PFYR++ ADSRSPRDG+ +E +G YNP+        + ++ +    WL  GA+PSD V+ +    G++
Sbjct:    3 VKIRLKRMGAKKSPFYRIVVADSRSPRDGRFIETVGTYNPVAKP---AEVKIDEELALKWLQTGAKPSDTVRNLFSSQGIM 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_AZOPC (30S ribosomal protein S16 OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.089e-12
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRL R G K   FY ++ ADSR+PR+G  +E +G+YNP         + L F+R  YWL+VGAQP+D  + IL   G+
Sbjct:    5 IRLQRHGRKGYAFYHIVIADSRAPRNGNFIERIGFYNPNTNP---ATINLKFERALYWLNVGAQPTDTARNILSCEGI 79          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_ACIC1 (30S ribosomal protein S16 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.089e-12
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL--------FRAGLLPPP 258
            V IRL R G    P+YR++ AD+R+ RDG+ +E +G Y+P   +     + +N +RV YWLSVGAQP++PV+ +L        F     PPP
Sbjct:    3 VKIRLTRMGKIRAPYYRIVVADARTKRDGRAIEEIGQYDP---KQEPSLIRVNSERVAYWLSVGAQPTEPVKALLKVTGDWQRFTGEPAPPP 91          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_SULDN (30S ribosomal protein S16 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   10 VIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFR 237
            VIRL R G K +PFYR+   DSR  RDG  +E++G++NP+  +   K   ++ +R+ YWLSVGA+ SD V++I  R
Sbjct:    4 VIRLTRMGRKKQPFYRIAVTDSRKRRDGGWIELIGHHNPMVAE---KTTVVDNERLDYWLSVGAKMSDRVKKITGR 76          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_SHEPA (30S ribosomal protein S16 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 33/76 (43.42%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRLAR G K +PFY ++ ADSR+ RDG+ +E +G++NP+  GQ+  + + L+ DRV++W++ GA  +D V +++
Sbjct:    2 VTIRLARGGAKKRPFYNIVVADSRNARDGRFIERVGFFNPVARGQE--EALRLDLDRVEHWVANGAATTDRVAKLI 75          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_SHEHH (30S ribosomal protein S16 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 33/76 (43.42%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRLAR G K +PFY ++ ADSR+ RDG+ +E +G++NP+  GQ+  + + L+ DRV++W++ GA  +D V +++
Sbjct:    2 VTIRLARGGAKKRPFYNIVVADSRNARDGRFIERVGFFNPVARGQE--EALRLDLDRVEHWVANGAATTDRVAKLI 75          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RALEJ (30S ribosomal protein S16 OS=Ralstonia eutropha (strain JMP134) GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            VVIRLAR G K +PF+ ++A DSR+ RDG+ +E +G+YNPL  +   + + +  DR+ YW  VGAQ S  V R++
Sbjct:    2 VVIRLARGGSKKRPFFNIVATDSRNRRDGRFIERVGFYNPLASEG-EEGLRVVADRLAYWQGVGAQLSPTVARLV 75          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_ORITB (30S ribosomal protein S16 OS=Orientia tsutsugamushi (strain Boryong) GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPP 255
            V IRLAR G K   +++++ A++ SPRDG  +E +G+YNP+  +D  +R+ L  DR+++WLS GAQP++ V   L +  +  P
Sbjct:    3 VKIRLARSGAKKCAYFKIVIANNCSPRDGAFIEKVGHYNPMLPKDNHERVILKTDRIEHWLSHGAQPTEKVINFLQQFSITLP 85          
The following BLAST results are available for this feature:
BLAST of EL492543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_DEHE13.089e-1239.2430S ribosomal protein S16 OS=Dehalococcoides ethen... [more]
RS16_BORGA3.089e-1245.0030S ribosomal protein S16 OS=Borrelia garinii GN=r... [more]
RS16_BACSU3.089e-1241.9830S ribosomal protein S16 OS=Bacillus subtilis GN=... [more]
RS16_AZOPC3.089e-1244.8730S ribosomal protein S16 OS=Azobacteroides pseudo... [more]
RS16_ACIC13.089e-1241.3030S ribosomal protein S16 OS=Acidothermus cellulol... [more]
RS16_SULDN4.035e-1246.0530S ribosomal protein S16 OS=Sulfurimonas denitrif... [more]
RS16_SHEPA4.035e-1243.4230S ribosomal protein S16 OS=Shewanella pealeana (... [more]
RS16_SHEHH4.035e-1243.4230S ribosomal protein S16 OS=Shewanella halifaxens... [more]
RS16_RALEJ4.035e-1246.6730S ribosomal protein S16 OS=Ralstonia eutropha (s... [more]
RS16_ORITB4.035e-1240.9630S ribosomal protein S16 OS=Orientia tsutsugamush... [more]

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Properties
Property NameValue
Genbank descriptionC2841 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2841, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492543 ID=EL492543; Name=EL492543; organism=Citrus sinensis; type=EST; length=259bp
GACTGCGTAGTGATCCGATTGGCGAGATTCGGATGTAAGAACAAACCTTT
CTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGCAAGCATC
TTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACTGCGGCAAA
AGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTGC
CCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAGGGCAGGGTTACTAC
CCCCACCTC
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