EL492543

Overview
NameEL492543
Unique NameEL492543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_NOCFA (30S ribosomal protein S16 OS=Nocardia farcinica GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V I+L R G    P YRV+ AD+R+ RDG+ +E +G Y+P   ++    + ++ +RV+YWLSVGAQP++PVQR+L
Sbjct:    3 VRIKLTRLGKIRNPQYRVVVADARTRRDGRAIESIGKYHP---KEEPSLIEIDSERVQYWLSVGAQPTEPVQRLL 74          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_METI4 (30S ribosomal protein S16 OS=Methylacidiphilum infernorum (isolate V4) GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            VVIRL R G K +P YR++ AD R P +GK++E +G+Y+P+     G R  L   RV YWL  GA+P++ V +I+ +   L
Sbjct:    3 VVIRLRREGKKGRPQYRIVVADKRCPTNGKYIEEVGFYDPMVEAPQGYR--LKLQRVSYWLKQGAKPTETVDQIIKKVSKL 81          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_HELAH (30S ribosomal protein S16 OS=Helicobacter acinonychis (strain Sheeba) GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   10 VIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 240
            VIRL R G K KPFYRV+  DSR  RDG  +E +GYYNPL      K + ++ +R+ YW  VGA+ S+ V+++  +A
Sbjct:    3 VIRLTRIGRKKKPFYRVVVTDSRKRRDGGWIESIGYYNPLSEP---KDIKIDKERLDYWKGVGAKMSERVEKLSQKA 76          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_CLOPH (30S ribosomal protein S16 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K  PFYRV+ ADSRSPRDGK +  +G Y+P           ++ +  K WL+ GAQP++ + R+  +AG++
Sbjct:    3 VKIRLKRMGQKKAPFYRVIVADSRSPRDGKFIAEIGTYDPTQEPSA---FNVDEEAAKKWLADGAQPTETINRLFKKAGIV 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_BUCAT (30S ribosomal protein S16 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 31/75 (41.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRLAR+G K +PFY+++ ADSR  R+G+ +E LGY+NP+  +   + + LN +R+++W + GAQ S+  ++++
Sbjct:    2 VKIRLARYGTKKRPFYKLVVADSRFSRNGRFIERLGYFNPI-AKGKSEILKLNLERIEHWTNQGAQMSERTKKLI 75          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_BUCAI (30S ribosomal protein S16 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 31/75 (41.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRLAR+G K +PFY+++ ADSR  R+G+ +E LGY+NP+  +   + + LN +R+++W + GAQ S+  ++++
Sbjct:    2 VKIRLARYGTKKRPFYKLVVADSRFSRNGRFIERLGYFNPI-AKGKSEILKLNLERIEHWTNQGAQMSERTKKLI 75          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_BUCA5 (30S ribosomal protein S16 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=rpsP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.035e-12
Identity = 31/75 (41.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRLAR+G K +PFY+++ ADSR  R+G+ +E LGY+NP+  +   + + LN +R+++W + GAQ S+  ++++
Sbjct:    2 VKIRLARYGTKKRPFYKLVVADSRFSRNGRFIERLGYFNPI-AKGKSEILKLNLERIEHWTNQGAQMSERTKKLI 75          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_YERE8 (30S ribosomal protein S16 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.270e-12
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL-PGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 240
            V IRLAR G K +PFY+V+  DSR+ RDG+ +E +G++NP+  GQ   + + L+ DR+ +W+ +GA  SD V  ++  A
Sbjct:    2 VTIRLARGGAKKRPFYQVVVTDSRNARDGRFIERVGFFNPIASGQ--AEALRLDLDRINHWVELGATVSDRVSALIKEA 78          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_THENN (30S ribosomal protein S16 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.270e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G + +PFYR++  DSR  RDG ++E LGYYNPL   +    + ++ +R   W+  GAQPSD V+ I  + G++
Sbjct:    2 VRIRLTRMGKRKQPFYRIVVVDSRKRRDGAYIESLGYYNPLKEGE----IKIDVERAVDWILKGAQPSDTVRDIFKKFGVM 78          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_SHEWM (30S ribosomal protein S16 OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.270e-12
Identity = 33/76 (43.42%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRLAR G K +PFY ++ ADSR+ RDG+ +E +G++NP+  GQ+  + + L+ DRV++W++ GA  S+ V +++
Sbjct:    2 VTIRLARGGAKKRPFYNIVVADSRNARDGRFIERVGFFNPMARGQE--ETLRLDLDRVEHWVTNGAGTSERVAKLI 75          
The following BLAST results are available for this feature:
BLAST of EL492543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_NOCFA4.035e-1246.6730S ribosomal protein S16 OS=Nocardia farcinica GN... [more]
RS16_METI44.035e-1243.2130S ribosomal protein S16 OS=Methylacidiphilum inf... [more]
RS16_HELAH4.035e-1246.7530S ribosomal protein S16 OS=Helicobacter acinonyc... [more]
RS16_CLOPH4.035e-1243.2130S ribosomal protein S16 OS=Clostridium phytoferm... [more]
RS16_BUCAT4.035e-1241.3330S ribosomal protein S16 OS=Buchnera aphidicola s... [more]
RS16_BUCAI4.035e-1241.3330S ribosomal protein S16 OS=Buchnera aphidicola s... [more]
RS16_BUCA54.035e-1241.3330S ribosomal protein S16 OS=Buchnera aphidicola s... [more]
RS16_YERE85.270e-1243.0430S ribosomal protein S16 OS=Yersinia enterocoliti... [more]
RS16_THENN5.270e-1243.2130S ribosomal protein S16 OS=Thermotoga neapolitan... [more]
RS16_SHEWM5.270e-1243.4230S ribosomal protein S16 OS=Shewanella woodyi (st... [more]

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Properties
Property NameValue
Genbank descriptionC2841 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2841, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492543 ID=EL492543; Name=EL492543; organism=Citrus sinensis; type=EST; length=259bp
GACTGCGTAGTGATCCGATTGGCGAGATTCGGATGTAAGAACAAACCTTT
CTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGCAAGCATC
TTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACTGCGGCAAA
AGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTGC
CCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAGGGCAGGGTTACTAC
CCCCACCTC
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