EL492543

Overview
NameEL492543
Unique NameEL492543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_YERPE (30S ribosomal protein S16 OS=Yersinia pestis GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL-PGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRLAR G K +PFY+V+  DSR+ RDG+ +E +G++NP+  GQ   + + L+ DR+++W+ +GA  SD V  ++
Sbjct:    2 VTIRLARGGAKKRPFYQVVVTDSRNARDGRFIERVGFFNPIASGQ--AEALRLDLDRIEHWIGLGATVSDRVSVLI 75          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_YERPB (30S ribosomal protein S16 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL-PGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRLAR G K +PFY+V+  DSR+ RDG+ +E +G++NP+  GQ   + + L+ DR+++W+ +GA  SD V  ++
Sbjct:    2 VTIRLARGGAKKRPFYQVVVTDSRNARDGRFIERVGFFNPIASGQ--AEALRLDLDRIEHWIGLGATVSDRVSVLI 75          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_YERPA (30S ribosomal protein S16 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL-PGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRLAR G K +PFY+V+  DSR+ RDG+ +E +G++NP+  GQ   + + L+ DR+++W+ +GA  SD V  ++
Sbjct:    2 VTIRLARGGAKKRPFYQVVVTDSRNARDGRFIERVGFFNPIASGQ--AEALRLDLDRIEHWIGLGATVSDRVSVLI 75          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_YERP3 (30S ribosomal protein S16 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL-PGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRLAR G K +PFY+V+  DSR+ RDG+ +E +G++NP+  GQ   + + L+ DR+++W+ +GA  SD V  ++
Sbjct:    2 VTIRLARGGAKKRPFYQVVVTDSRNARDGRFIERVGFFNPIASGQ--AEALRLDLDRIEHWIGLGATVSDRVSVLI 75          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_VARPS (30S ribosomal protein S16 OS=Variovorax paradoxus (strain S110) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPP 255
            VVIRL+R G K +PF+ ++ +D R  RDG+ +E LG+YNP   ++  + + +  DR+ YW SVGAQ S  V R++ +A    P
Sbjct:    2 VVIRLSRGGSKGRPFFNIVVSDKRVRRDGRFIERLGFYNP-TAKENEESIRIAQDRLAYWKSVGAQASPTVLRLIKQAAAAAP 83          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STAHJ (30S ribosomal protein S16 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K  PFYR++ AD+RSPRDG+ +E +G YNP         + ++ +    WL  GA+P+D V  IL + G+L
Sbjct:    3 VKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPASVN--APEVKIDEELALKWLKDGAKPTDTVHNILSKQGIL 81          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_SHESR (30S ribosomal protein S16 OS=Shewanella sp. (strain MR-7) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 34/76 (44.74%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRLAR G K +PFY ++ ADSR+ RDG+ +E +G++NPL  GQ+  + + L+  RV++W+S GA  +D V +++
Sbjct:    2 VTIRLARGGAKKRPFYNIVVADSRNARDGRFIERVGFFNPLARGQE--ETLRLDLARVEHWVSNGAATTDRVAKLI 75          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_SHESM (30S ribosomal protein S16 OS=Shewanella sp. (strain MR-4) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 34/76 (44.74%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRLAR G K +PFY ++ ADSR+ RDG+ +E +G++NPL  GQ+  + + L+  RV++W+S GA  +D V +++
Sbjct:    2 VTIRLARGGAKKRPFYNIVVADSRNARDGRFIERVGFFNPLARGQE--ETLRLDLARVEHWVSNGAATTDRVAKLI 75          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_SHELP (30S ribosomal protein S16 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 33/76 (43.42%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRLAR G K +PFY ++ ADSR+ RDG+ +E +G++NP+  GQ+  + + L+ DRV +W++ GA  +D V +++
Sbjct:    2 VTIRLARGGAKKRPFYNIVVADSRNARDGRFIERVGFFNPVARGQE--EALRLDLDRVDHWVANGAATTDRVAKLI 75          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_PELPB (30S ribosomal protein S16 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K  P Y+++ AD+RSPRDGK LEV+G Y P         + +  DR+ YW+  GAQP+  V  ++   GLL
Sbjct:    2 VKIRLKRAGRKKLPVYQIVVADARSPRDGKFLEVVGTYQPTAKPHA---VTIKKDRIVYWMQTGAQPTATVNSLIRTTGLL 79          
The following BLAST results are available for this feature:
BLAST of EL492543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_YERPE6.883e-1243.4230S ribosomal protein S16 OS=Yersinia pestis GN=rp... [more]
RS16_YERPB6.883e-1243.4230S ribosomal protein S16 OS=Yersinia pseudotuberc... [more]
RS16_YERPA6.883e-1243.4230S ribosomal protein S16 OS=Yersinia pestis bv. A... [more]
RS16_YERP36.883e-1243.4230S ribosomal protein S16 OS=Yersinia pseudotuberc... [more]
RS16_VARPS6.883e-1242.1730S ribosomal protein S16 OS=Variovorax paradoxus ... [more]
RS16_STAHJ6.883e-1243.2130S ribosomal protein S16 OS=Staphylococcus haemol... [more]
RS16_SHESR6.883e-1244.7430S ribosomal protein S16 OS=Shewanella sp. (strai... [more]
RS16_SHESM6.883e-1244.7430S ribosomal protein S16 OS=Shewanella sp. (strai... [more]
RS16_SHELP6.883e-1243.4230S ribosomal protein S16 OS=Shewanella loihica (s... [more]
RS16_PELPB6.883e-1244.4430S ribosomal protein S16 OS=Pelodictyon phaeoclat... [more]

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Properties
Property NameValue
Genbank descriptionC2841 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2841, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492543 ID=EL492543; Name=EL492543; organism=Citrus sinensis; type=EST; length=259bp
GACTGCGTAGTGATCCGATTGGCGAGATTCGGATGTAAGAACAAACCTTT
CTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGCAAGCATC
TTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACTGCGGCAAA
AGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTGC
CCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAGGGCAGGGTTACTAC
CCCCACCTC
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