EL492543

Overview
NameEL492543
Unique NameEL492543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_PARUW (30S ribosomal protein S16 OS=Protochlamydia amoebophila (strain UWE25) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 29/73 (39.73%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            IRL + G  N+ F+R++  D+RSPRDGK++E LG+YNP+  +D  K++    DR+++WL++GA+ ++    ++
Sbjct:    5 IRLRQHGRTNRSFFRLVVTDARSPRDGKYVEALGWYNPVEAED-DKKLFFKADRIQHWLNLGAELTESAASLI 76          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_NITEC (30S ribosomal protein S16 OS=Nitrosomonas eutropha (strain C91) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP 258
            VV+RLAR G K +PFY ++ ADSR  RDGK +E +G+YNP       + + +  DR+ +W S GAQ S  V R++ + G    P
Sbjct:    2 VVVRLARGGAKKRPFYNMVVADSRRHRDGKFIERVGFYNP-RATGGEESLRIQMDRLNHWQSQGAQLSSTVSRLVKQFGRQQKP 84          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_LEPCP (30S ribosomal protein S16 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 240
            VVIRL+R G K +PFY ++AA+S + RDG+ LE +G+YNP+      + + + FDRV++W+S GAQ S    R++ +A
Sbjct:    2 VVIRLSRGGSKRRPFYNIVAANSANRRDGRFLERVGFYNPV-ASGGEEALRIAFDRVEHWVSHGAQLSPTAARLVKQA 78          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_KINRD (30S ribosomal protein S16 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 231
            V IRL R G    PFYR++ ADSR+ RDG+ +E +G YNP+        + +  +RV+YWL VGAQP++ V  +L
Sbjct:    3 VKIRLKRMGQIRAPFYRIVVADSRNKRDGRSIEEIGLYNPMTDP---STIEVKSERVQYWLGVGAQPTEQVAALL 74          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_DEIRA (30S ribosomal protein S16 OS=Deinococcus radiodurans GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            V IRL+RFG  + P YR++ AD R PRDG ++E LG+Y+P    +    + ++ +R  +W++ GAQP+D  +R+L   G+
Sbjct:    2 VKIRLSRFGSAHNPHYRIVVADVRRPRDGGYIESLGHYDPRKTSE--NFLKIDVERANHWIAQGAQPTDTARRLLRSQGV 79          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_DEIDV (30S ribosomal protein S16 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            V IRL+RFG  + P YR++  D+R PRDG ++E LG+Y+P    +    + +N +R  YWL+ GAQP+   +R+L   G+
Sbjct:    2 VKIRLSRFGSTHNPHYRIVVTDARRPRDGGYIENLGHYDPRKTTE--TYLKVNTERAAYWLAQGAQPTQTARRLLKAQGV 79          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_ACTPJ (30S ribosomal protein S16 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL-PGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 240
            V IRL R G K +PFY+++ ADSRSPRDG+ +E +G++NPL  GQ   +R+ L+  +V  W++ GA  SD V  ++  A
Sbjct:    2 VTIRLTRGGAKKRPFYQIVVADSRSPRDGRFIERIGFFNPLAAGQ--AERLRLDVAKVDAWVAKGADLSDRVASLVKEA 78          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_ACTP7 (30S ribosomal protein S16 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL-PGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 240
            V IRL R G K +PFY+++ ADSRSPRDG+ +E +G++NPL  GQ   +R+ L+  +V  W++ GA  SD V  ++  A
Sbjct:    2 VTIRLTRGGAKKRPFYQIVVADSRSPRDGRFIERIGFFNPLAAGQ--AERLRLDVAKVDAWVAKGADLSDRVASLVKEA 78          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_ACTP2 (30S ribosomal protein S16 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpsP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.883e-12
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL-PGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 240
            V IRL R G K +PFY+++ ADSRSPRDG+ +E +G++NPL  GQ   +R+ L+  +V  W++ GA  SD V  ++  A
Sbjct:    2 VTIRLTRGGAKKRPFYQIVVADSRSPRDGRFIERIGFFNPLAAGQ--AERLRLDVAKVDAWVAKGADLSDRVASLVKEA 78          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_XANCP (30S ribosomal protein S16 OS=Xanthomonas campestris pv. campestris GN=rpsP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.989e-12
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRI 228
            V IRL R G K +PFY ++  D RS RDG+++E LGYYNP+  Q    R+ L+  RV +W+  GAQ +D V+ +
Sbjct:    2 VKIRLTRGGAKKRPFYHIIVTDVRSARDGRNIERLGYYNPV-AQGAEPRVVLDVARVDHWVGQGAQLTDKVRNL 74          
The following BLAST results are available for this feature:
BLAST of EL492543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_PARUW6.883e-1239.7330S ribosomal protein S16 OS=Protochlamydia amoebo... [more]
RS16_NITEC6.883e-1242.8630S ribosomal protein S16 OS=Nitrosomonas eutropha... [more]
RS16_LEPCP6.883e-1244.8730S ribosomal protein S16 OS=Leptothrix cholodnii ... [more]
RS16_KINRD6.883e-1245.3330S ribosomal protein S16 OS=Kineococcus radiotole... [more]
RS16_DEIRA6.883e-1240.0030S ribosomal protein S16 OS=Deinococcus radiodura... [more]
RS16_DEIDV6.883e-1241.2530S ribosomal protein S16 OS=Deinococcus deserti (... [more]
RS16_ACTPJ6.883e-1245.5730S ribosomal protein S16 OS=Actinobacillus pleuro... [more]
RS16_ACTP76.883e-1245.5730S ribosomal protein S16 OS=Actinobacillus pleuro... [more]
RS16_ACTP26.883e-1245.5730S ribosomal protein S16 OS=Actinobacillus pleuro... [more]
RS16_XANCP8.989e-1245.9530S ribosomal protein S16 OS=Xanthomonas campestri... [more]

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Properties
Property NameValue
Genbank descriptionC2841 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2841, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492543 ID=EL492543; Name=EL492543; organism=Citrus sinensis; type=EST; length=259bp
GACTGCGTAGTGATCCGATTGGCGAGATTCGGATGTAAGAACAAACCTTT
CTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGCAAGCATC
TTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACTGCGGCAAA
AGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTGC
CCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAGGGCAGGGTTACTAC
CCCCACCTC
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