EL492543

Overview
NameEL492543
Unique NameEL492543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_LACGA (30S ribosomal protein S16 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.166e-17
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IR+ R G K KPFYR++ ADSR PRDG+ +E +GYYNPL   D    + L  D++  WL  GAQPSD V+ +L +AGL+
Sbjct:    3 VKIRMRRMGSKRKPFYRIVVADSRMPRDGRFIEEVGYYNPLTNPD---EVKLEEDKIFEWLEKGAQPSDTVRSLLSKAGLM 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_EHRRW (30S ribosomal protein S16 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.166e-17
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPV 219
            V IRLARFG K +PFYRV+ ADSR  RDG+ +E+LG+YNP+  ++    + +  DR+KYWLSVGAQP++ +
Sbjct:    3 VKIRLARFGAKKRPFYRVVVADSRVARDGRFIELLGFYNPMLPKEHPSFLKVKVDRLKYWLSVGAQPTERI 73          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RT16_BOVIN (28S ribosomal protein S16, mitochondrial OS=Bos taurus GN=MRPS16 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.441e-17
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 252
            + IRLA  GC N+PFYR++AA ++ PRDG+ +E LG Y+P+P     K + LN DR+++W+  GA  S PV+++L  +G  P
Sbjct:   17 LTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIGCGAHLSKPVEKLLGLSGFFP 98          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_ROSS1 (30S ribosomal protein S16 OS=Roseiflexus sp. (strain RS-1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.441e-17
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G   +P YR++ ADSR+PRDGK +E++G+YNP+      K + +  DRV+YWLSVGAQPS+ V R+L + G+L
Sbjct:    2 VTIRLRRMGKTKQPSYRLVVADSRAPRDGKFIEIVGHYNPVRQP---KELHVKADRVRYWLSVGAQPSETVVRLLKQVGVL 79          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_GLUOX (30S ribosomal protein S16 OS=Gluconobacter oxydans GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.441e-17
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP 258
            IRLAR G K +P+Y ++ ADSRSPRDG+ +E +G YNP+   D   R+ L  +R+K+WLS GA  +D V R L  AGL P P
Sbjct:    5 IRLARAGAKKRPYYHIVVADSRSPRDGRFIEKVGSYNPMLPADHADRIRLVDERIKHWLSNGALATDRVARFLGNAGLAPKP 86          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_DICTD (30S ribosomal protein S16 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.441e-17
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            V IRL R G KNKP YR++A DSR PRDGKHLE+LG+Y+P   +     + L  +R+ YWLS GAQP+D V  IL R G+
Sbjct:    2 VKIRLTRVGAKNKPAYRIVAMDSREPRDGKHLEILGFYDP---KTDPATIQLKEERILYWLSQGAQPTDTVLSILKRYGV 78          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RT16_MOUSE (28S ribosomal protein S16, mitochondrial OS=Mus musculus GN=Mrps16 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 252
            + IRLA  GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP     K + LN DR+++W+  GA  S P++++L  +G  P
Sbjct:   17 LTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLSGFFP 98          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRZT (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRZP (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain P1031) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRZJ (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain JJA) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80          
The following BLAST results are available for this feature:
BLAST of EL492543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_LACGA4.166e-1751.8530S ribosomal protein S16 OS=Lactobacillus gasseri... [more]
RS16_EHRRW4.166e-1754.9330S ribosomal protein S16 OS=Ehrlichia ruminantium... [more]
RT16_BOVIN5.441e-1745.1228S ribosomal protein S16, mitochondrial OS=Bos ta... [more]
RS16_ROSS15.441e-1751.8530S ribosomal protein S16 OS=Roseiflexus sp. (stra... [more]
RS16_GLUOX5.441e-1751.2230S ribosomal protein S16 OS=Gluconobacter oxydans... [more]
RS16_DICTD5.441e-1755.0030S ribosomal protein S16 OS=Dictyoglomus turgidum... [more]
RT16_MOUSE7.106e-1745.1228S ribosomal protein S16, mitochondrial OS=Mus mu... [more]
RS16_STRZT7.106e-1754.3230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRZP7.106e-1754.3230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRZJ7.106e-1754.3230S ribosomal protein S16 OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionC2841 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2841, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492543 ID=EL492543; Name=EL492543; organism=Citrus sinensis; type=EST; length=259bp
GACTGCGTAGTGATCCGATTGGCGAGATTCGGATGTAAGAACAAACCTTT
CTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGCAAGCATC
TTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACTGCGGCAAA
AGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTGC
CCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAGGGCAGGGTTACTAC
CCCCACCTC
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