EL492543

Overview
NameEL492543
Unique NameEL492543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRU0 (30S ribosomal protein S16 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ L  DR+  WLS GAQPSD V+ +L +AG++
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QVTLKEDRILDWLSKGAQPSDTVRNLLSKAGVM 80
[Close]
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRR6 (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRPS (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain CGSP14) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRPN (30S ribosomal protein S16 OS=Streptococcus pneumoniae GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRPJ (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRPI (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRP7 (30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain 70585) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRP4 (30S ribosomal protein S16 OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLTWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRP2 (30S ribosomal protein S16 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL+ GAQPSD V+ IL + G+L
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLANGAQPSDTVRNILSKEGVL 80
[Close]
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_LACLA (30S ribosomal protein S16 OS=Lactococcus lactis subsp. lactis GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.106e-17
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSR+PRDGK +E +G YNPL  ++   ++ L  +RV  WLS GAQPSD V+ +L +AG++
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRAPRDGKFIETVGTYNPLVTEE---QVTLKEERVLEWLSKGAQPSDTVRNLLSKAGVM 80
The following BLAST results are available for this feature:
BLAST of EL492543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_STRU07.106e-1751.8530S ribosomal protein S16 OS=Streptococcus uberis ... [more]
RS16_STRR67.106e-1754.3230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRPS7.106e-1754.3230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRPN7.106e-1754.3230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRPJ7.106e-1754.3230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRPI7.106e-1754.3230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRP77.106e-1754.3230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRP47.106e-1754.3230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_STRP27.106e-1754.3230S ribosomal protein S16 OS=Streptococcus pneumon... [more]
RS16_LACLA7.106e-1753.0930S ribosomal protein S16 OS=Lactococcus lactis su... [more]

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Properties
Property NameValue
Genbank descriptionC2841 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2841, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492543 ID=EL492543; Name=EL492543; organism=Citrus sinensis; type=EST; length=259bp
GACTGCGTAGTGATCCGATTGGCGAGATTCGGATGTAAGAACAAACCTTT
CTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGCAAGCATC
TTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACTGCGGCAAA
AGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTGC
CCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAGGGCAGGGTTACTAC
CCCCACCTC
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