EL492543

Overview
NameEL492543
Unique NameEL492543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_THETN (30S ribosomal protein S16 OS=Thermoanaerobacter tengcongensis GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.281e-17
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL RFG K +PFYR++ ADSRSPRDG+ ++ +GYYNP+        + ++ ++ K WLSVGAQPSD V+ +  + G++
Sbjct:    3 VRIRLKRFGAKKRPFYRIVVADSRSPRDGRFIDEIGYYNPIAEP---AEIKIDVEKAKKWLSVGAQPSDTVKSLFRKEGII 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_THEPX (30S ribosomal protein S16 OS=Thermoanaerobacter sp. (strain X514) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.281e-17
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL RFG K +PFYR++ ADSRSPRDG+ ++ +GYYNP+        + ++ ++ K WLSVGAQPSD V+ +  + G++
Sbjct:    3 VRIRLKRFGAKKRPFYRIVVADSRSPRDGRFIDEIGYYNPIAQP---AEIKIDVEKAKKWLSVGAQPSDTVKSLFKKEGII 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_THEP3 (30S ribosomal protein S16 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.281e-17
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL RFG K +PFYR++ ADSRSPRDG+ ++ +GYYNP+        + ++ ++ K WLSVGAQPSD V+ +  + G++
Sbjct:    3 VRIRLKRFGAKKRPFYRIVVADSRSPRDGRFIDEIGYYNPIAQP---AEIKIDVEKAKKWLSVGAQPSDTVKSLFKKEGII 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RICTY (30S ribosomal protein S16 OS=Rickettsia typhi GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.281e-17
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPP 255
            V IRLAR G K +PFYRV+ A++ +PRDG  LE +G YNP+   D  +R+ L  DR++YWLS GA+P++ V + + +AG+  P
Sbjct:    3 VKIRLARGGAKKRPFYRVVIANATAPRDGDFLEKVGTYNPMLASDNSERVVLKKDRIEYWLSTGAKPTERVAKFIEKAGVTLP 85          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_PELUB (30S ribosomal protein S16 OS=Pelagibacter ubique GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.281e-17
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP 258
            + IRL+R G K +P Y+V+ ADSR  RDG+ +E +G++NPL  +D  +R+GL  +R+KYWL  GAQP+  V RIL   G++  P
Sbjct:    2 IKIRLSRGGTKKRPVYKVVIADSRRARDGRFIEKVGFFNPLLPKDKKERVGLEAERIKYWLGQGAQPTTRVARILGENGIIAMP 85          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_THERP (30S ribosomal protein S16 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.212e-16
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPP 255
            + +RL R G K +P YR++AA++R PRDG+ +EV+GYYNP   +     + +N +R ++WL  GAQP+D V+ +L RAG+LPP
Sbjct:    2 IKLRLRRMGKKRQPHYRIVAAEARWPRDGRFIEVIGYYNP---RTDPYTLEVNVERARWWLEHGAQPTDTVRALLVRAGVLPP 81          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRSV (30S ribosomal protein S16 OS=Streptococcus sanguinis (strain SK36) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.212e-16
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DR+  WL  GAQPSD V+ IL + G+L
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRILEWLGNGAQPSDTVRNILSKEGVL 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_ROSCS (30S ribosomal protein S16 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.212e-16
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G   KP YR++ ADSR+PRDG+ +E++G+YNP+      K + +  DRV+YWL VGAQPS+ V R+L + G+L
Sbjct:    2 VTIRLRRTGKTKKPSYRLVVADSRAPRDGRFIEIVGHYNPVRQP---KELNVKADRVRYWLGVGAQPSETVVRLLKQVGVL 79          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_LACLM (30S ribosomal protein S16 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.212e-16
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSR+PRDGK +E +G YNPL  ++   ++ L  +RV  WLS GAQPSD V+ +L +AG++
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRAPRDGKFIETVGTYNPLVTEN---QVTLKEERVLEWLSNGAQPSDTVRNLLSKAGVM 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_HERA2 (30S ribosomal protein S16 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.212e-16
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K+KP YRV+ ADS +PRDGK +E +G+YNP   Q   K + +  DR +YWLSVGAQPSD V R+L   G++
Sbjct:    2 VRIRLRRMGMKHKPAYRVVIADSHAPRDGKFIETIGHYNP---QAQPKVVFIKEDRARYWLSVGAQPSDTVVRLLKNLGVV 79          
The following BLAST results are available for this feature:
BLAST of EL492543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_THETN9.281e-1748.1530S ribosomal protein S16 OS=Thermoanaerobacter te... [more]
RS16_THEPX9.281e-1748.1530S ribosomal protein S16 OS=Thermoanaerobacter sp... [more]
RS16_THEP39.281e-1748.1530S ribosomal protein S16 OS=Thermoanaerobacter ps... [more]
RS16_RICTY9.281e-1748.1930S ribosomal protein S16 OS=Rickettsia typhi GN=r... [more]
RS16_PELUB9.281e-1747.6230S ribosomal protein S16 OS=Pelagibacter ubique G... [more]
RS16_THERP1.212e-1646.9930S ribosomal protein S16 OS=Thermomicrobium roseu... [more]
RS16_STRSV1.212e-1653.0930S ribosomal protein S16 OS=Streptococcus sanguin... [more]
RS16_ROSCS1.212e-1650.6230S ribosomal protein S16 OS=Roseiflexus castenhol... [more]
RS16_LACLM1.212e-1653.0930S ribosomal protein S16 OS=Lactococcus lactis su... [more]
RS16_HERA21.212e-1654.3230S ribosomal protein S16 OS=Herpetosiphon auranti... [more]

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Properties
Property NameValue
Genbank descriptionC2841 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2841, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492543 ID=EL492543; Name=EL492543; organism=Citrus sinensis; type=EST; length=259bp
GACTGCGTAGTGATCCGATTGGCGAGATTCGGATGTAAGAACAAACCTTT
CTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGCAAGCATC
TTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACTGCGGCAAA
AGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTGC
CCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAGGGCAGGGTTACTAC
CCCCACCTC
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