EL492543

Overview
NameEL492543
Unique NameEL492543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_DICT6 (30S ribosomal protein S16 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.212e-16
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            V IRL R G KNKP YR++A DSR PRDGKHLE+LG+Y+P   +     + L  +R+ YWLS GAQP+D V  IL + G+
Sbjct:    2 VKIRLTRVGAKNKPAYRIVAMDSREPRDGKHLEILGFYDP---KTDPATIQLKEERILYWLSQGAQPTDTVLSILKKYGV 78          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRMU (30S ribosomal protein S16 OS=Streptococcus mutans GN=rpsP PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.583e-16
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ L  DR+  WL  GAQPSD V+ IL +AG++
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVTEN---QVTLKEDRILEWLGNGAQPSDTVRNILSKAGIM 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RICAH (30S ribosomal protein S16 OS=Rickettsia akari (strain Hartford) GN=rpsP PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.583e-16
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPP 255
            V IRLAR G K +PFYRV+ A++ +PRDG  LE +G YNP+   D  +R+ L  DR++YWL  GA+P++ V + + +AGL  P
Sbjct:    3 VKIRLARGGAKKRPFYRVVIANAAAPRDGDFLEKVGTYNPMLASDNSERVVLKKDRIEYWLGTGAKPTERVAKFIEQAGLTLP 85          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_LACLS (30S ribosomal protein S16 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpsP PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.583e-16
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSR+PRDGK +E +G YNPL  ++   ++ L  +RV  WLS GAQPSD V+ +L +AG++
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRAPRDGKFIETVGTYNPLLTEN---QVTLKEERVLEWLSNGAQPSDTVRNLLSKAGVM 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRS7 (30S ribosomal protein S16 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpsP PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.067e-16
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ L  DRV  WL  GAQPSD V+ +L +AG++
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLDWLGKGAQPSDTVRSLLSKAGVM 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRGC (30S ribosomal protein S16 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpsP PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.067e-16
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KP+YR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV  WL  GAQPSD V+ IL + G+L
Sbjct:    3 VKIRLTRMGSKKKPYYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLAWLENGAQPSDTVRNILSKEGVL 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRE4 (30S ribosomal protein S16 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsP PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.067e-16
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ L  DRV  WL  GAQPSD V+ +L +AG++
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QVTLKEDRVLDWLGKGAQPSDTVRSLLSKAGVM 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRA5 (30S ribosomal protein S16 OS=Streptococcus agalactiae serotype V GN=rpsP PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.067e-16
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  +RV  WLS GAQPSD V+ +L +AG++
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QVTIKEERVLEWLSKGAQPSDTVRNLLSKAGVM 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRA3 (30S ribosomal protein S16 OS=Streptococcus agalactiae serotype III GN=rpsP PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.067e-16
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  +RV  WLS GAQPSD V+ +L +AG++
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QVTIKEERVLEWLSKGAQPSDTVRNLLSKAGVM 80          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_STRA1 (30S ribosomal protein S16 OS=Streptococcus agalactiae serotype Ia GN=rpsP PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.067e-16
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            V IRL R G K KPFYR+  ADSR+PRDG+ +E +G YNPL  ++   ++ +  +RV  WLS GAQPSD V+ +L +AG++
Sbjct:    3 VKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLVAEN---QVTIKEERVLEWLSKGAQPSDTVRNLLSKAGVM 80          
The following BLAST results are available for this feature:
BLAST of EL492543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_DICT61.212e-1653.7530S ribosomal protein S16 OS=Dictyoglomus thermoph... [more]
RS16_STRMU1.583e-1651.8530S ribosomal protein S16 OS=Streptococcus mutans ... [more]
RS16_RICAH1.583e-1648.1930S ribosomal protein S16 OS=Rickettsia akari (str... [more]
RS16_LACLS1.583e-1653.0930S ribosomal protein S16 OS=Lactococcus lactis su... [more]
RS16_STRS72.067e-1651.8530S ribosomal protein S16 OS=Streptococcus equi su... [more]
RS16_STRGC2.067e-1653.0930S ribosomal protein S16 OS=Streptococcus gordoni... [more]
RS16_STRE42.067e-1651.8530S ribosomal protein S16 OS=Streptococcus equi su... [more]
RS16_STRA52.067e-1650.6230S ribosomal protein S16 OS=Streptococcus agalact... [more]
RS16_STRA32.067e-1650.6230S ribosomal protein S16 OS=Streptococcus agalact... [more]
RS16_STRA12.067e-1650.6230S ribosomal protein S16 OS=Streptococcus agalact... [more]

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Properties
Property NameValue
Genbank descriptionC2841 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2841, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492543 ID=EL492543; Name=EL492543; organism=Citrus sinensis; type=EST; length=259bp
GACTGCGTAGTGATCCGATTGGCGAGATTCGGATGTAAGAACAAACCTTT
CTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGCAAGCATC
TTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACTGCGGCAAA
AGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTGC
CCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAGGGCAGGGTTACTAC
CCCCACCTC
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