CX046757

Overview
NameCX046757
Unique NameCX046757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046757_ssr383 microsatellite CX046757_ssr383:383..392. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046757_ssr393 microsatellite CX046757_ssr393:393..414. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT1_ANADF (Protein-L-isoaspartate O-methyltransferase 1 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=pcm1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.833e-13
Identity = 40/72 (55.56%), Postives = 46/72 (63.89%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLT 212
            GWPE AP+D + V AAAPE+P AL  QL PGGRMV+PVG     Q L+ VDK  DG         VR+VPLT
Sbjct:  137 GWPEAAPFDRVLVTAAAPEVPPALTAQLAPGGRMVVPVGAAPGLQVLRAVDKGNDGVDLSTDLIPVRFVPLT 208          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_SCHPO (Probable protein-L-isoaspartate O-methyltransferase OS=Schizosaccharomyces pombe GN=pcm2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLT 212
            G  E   +DAIHVGA+A E+PQ L+DQLK  G+++IP+G   Q++ +++KN+ G +S  +   VRYVPLT
Sbjct:  152 GTSEDEKFDAIHVGASASELPQKLVDQLKSPGKILIPIGTYSQNIYLIEKNEQGKISKRTLFPVRYVPLT 221          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_METTP (Protein-L-isoaspartate O-methyltransferase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=pcm PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSR 218
            G+ E APYD I V A+AP+IP+ L +QL+PGGRMVIPVG+  QDL VV KN D  + +     V +VPL  +
Sbjct:  133 GYSEQAPYDRISVAASAPDIPEPLKEQLRPGGRMVIPVGSYSQDLLVVTKNHD--IRVERAMGVIFVPLIGK 202          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT2_METAC (Protein-L-isoaspartate O-methyltransferase 2 OS=Methanosarcina acetivorans GN=pcm2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSR 218
            G+P +APYD I V  AAP IP+AL++QLKPGG MVIPVG+  Q+L  V K+ +G++    +  V +VP+  R
Sbjct:  161 GYPRYAPYDRIAVTCAAPTIPKALLEQLKPGGIMVIPVGDYSQELIRVKKDSNGNIYKKRKGEVIFVPMLGR 232          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_PELTS (Protein-L-isoaspartate O-methyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=pcm PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.836e-12
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN-IFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 239
            GWPE AP+D I V A AP +PQ L  QLKPGGR+V PVG+  +Q+L VV +  DG  ++    +V +VPL   +    GW
Sbjct:  150 GWPEAAPFDGIIVSAGAPAVPQTLCGQLKPGGRLVAPVGDKRWQELLVVRRALDGGYNVKKLGTVFFVPLVGEE----GW 225          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT2_SYNFM (Protein-L-isoaspartate O-methyltransferase 2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=pcm2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.836e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLT 212
            GW E AP+D I V AAA  IP  L+DQLKPGGRM+IPVG  F  Q L +V+K++ G         V +VPLT
Sbjct:  173 GWKEHAPFDGIVVTAAAGHIPPPLLDQLKPGGRMIIPVGGPFFVQQLMLVEKDEQGRTRTRQILPVAFVPLT 244          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT2_NITOC (Protein-L-isoaspartate O-methyltransferase 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=pcm2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.836e-12
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSR 218
            GWPE AP+D I V AAAP IP+ LIDQLKP  R+V+P+G    Q+L VV K ++  + I     V +VPLT +
Sbjct:  143 GWPEQAPFDGIMVTAAAPSIPKPLIDQLKPEARLVLPLGAGSPQELMVVTKKENDEIDIHRVLGVSFVPLTGK 215          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_THEON (Protein-L-isoaspartate O-methyltransferase OS=Thermococcus onnurineus (strain NA1) GN=pcm PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.133e-12
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 239
            G+P  APYD I V A AP +P+ L++QLKPGG+++IPVG  +++Q+L  V K +DGS+ +     V +VPL        GW
Sbjct:  142 GFPPKAPYDRILVAAGAPNVPEPLVEQLKPGGKLIIPVGSYHLWQELYEVIKLKDGSVKVKRHGGVAFVPLIGE----HGW 218          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_PYRAB (Protein-L-isoaspartate O-methyltransferase OS=Pyrococcus abyssi GN=pcm PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.343e-12
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPL 209
            G+P  APYD I V A AP++P+ L++QLKPGGR++IPVG  +++Q+L  V K + G + + +   V +VPL
Sbjct:  141 GFPPKAPYDVIIVTAGAPKVPEPLVEQLKPGGRLIIPVGSYHLWQELLEVVKKKSGEIKVRNHGGVAFVPL 211          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_METKA (Protein-L-isoaspartate O-methyltransferase OS=Methanopyrus kandleri GN=pcm PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.979e-12
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN-IFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 221
            G+P  APYD I V A AP++P++L++QLKPGG+MVIPVG+   Q+L +V+K +DG +         +VPL   +
Sbjct:  146 GYPPEAPYDRILVTAGAPDVPESLLEQLKPGGKMVIPVGDRHMQELWLVEKTEDGEIRRRRHGGCAFVPLIGEE 219          
The following BLAST results are available for this feature:
BLAST of CX046757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
PIMT1_ANADF2.833e-1355.56Protein-L-isoaspartate O-methyltransferase 1 OS=An... [more]
PIMT_SCHPO8.243e-1348.57Probable protein-L-isoaspartate O-methyltransferas... [more]
PIMT_METTP8.243e-1352.78Protein-L-isoaspartate O-methyltransferase OS=Meth... [more]
PIMT2_METAC1.077e-1250.00Protein-L-isoaspartate O-methyltransferase 2 OS=Me... [more]
PIMT_PELTS1.836e-1247.50Protein-L-isoaspartate O-methyltransferase OS=Pelo... [more]
PIMT2_SYNFM1.836e-1252.78Protein-L-isoaspartate O-methyltransferase 2 OS=Sy... [more]
PIMT2_NITOC1.836e-1250.68Protein-L-isoaspartate O-methyltransferase 2 OS=Ni... [more]
PIMT_THEON3.133e-1244.44Protein-L-isoaspartate O-methyltransferase OS=Ther... [more]
PIMT_PYRAB5.343e-1246.48Protein-L-isoaspartate O-methyltransferase OS=Pyro... [more]
PIMT_METKA6.979e-1245.95Protein-L-isoaspartate O-methyltransferase OS=Meth... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A06-B11-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046757 ID=CX046757; Name=CX046757; organism=Citrus sinensis; type=EST; length=467bp
AAGGTTGGCCAGAGTTTGCTCCCTATGATGCAATACATGTTGGAGCAGCA
GCCCCAGAAATTCCTCAGGCACTTATTGACCAGTTGAAACCTGGAGGCAG
AATGGTGATTCCAGTTGGTAATATATTTCAGGATTTGAAGGTGGTTGACA
AGAACCAAGATGGCTCTCTTAGCATCTGGAGTGAAACCTCTGTTCGTTAT
GTCCCTCTTACCAGTCGGGATGCCCAGTTGCGGGGCTGGTGAGGTTGATT
TCTTTTTCACTTGAAGATGGTTGGCAAGCTTTTGGTTATAGGACCAGGTT
GGAATGTGGAACAGAATCTCACTCTAATCCAGTATCATTGTGGGTTTTTT
TGGTTTTTTTTTCTCCTCTAAATTTCCTTGTATGTGTGTGTGTATATATA
TATATATATATATAATAAGCAAGTTATGCAAGGTTGTCTAGTTTCCATTC
NAAAAAAAAAAAAAAAA
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