FC871917

Overview
NameFC871917
Unique NameFC871917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6643 contig Csv1_Contig6643:2..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871917 vs. ExPASy Swiss-Prot
Match: SC61G_MOUSE (Protein transport protein Sec61 subunit gamma OS=Mus musculus GN=Sec61g PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 3
Query:   24 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 224
            MD +    +P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:    1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67          
BLAST of FC871917 vs. ExPASy Swiss-Prot
Match: SC61G_HUMAN (Protein transport protein Sec61 subunit gamma OS=Homo sapiens GN=SEC61G PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 3
Query:   24 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 224
            MD +    +P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:    1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67          
BLAST of FC871917 vs. ExPASy Swiss-Prot
Match: SC61G_CANFA (Protein transport protein Sec61 subunit gamma OS=Canis familiaris GN=SEC61G PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 3
Query:   24 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 224
            MD +    +P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:    1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67          
BLAST of FC871917 vs. ExPASy Swiss-Prot
Match: SC61G_BOVIN (Protein transport protein Sec61 subunit gamma OS=Bos taurus GN=SEC61G PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 3
Query:   24 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 224
            MD +    +P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:    1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67          
BLAST of FC871917 vs. ExPASy Swiss-Prot
Match: SC61G_CIOIN (Protein transport protein Sec61 subunit gamma OS=Ciona intestinalis GN=SEC61G PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 3
Query:   24 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 227
            MD +    +P + FAKDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVGS
Sbjct:    1 MDQVMAWVEPGKQFAKDSIRLVKRCTKPDRKEFQKIAVATAIGFAIMGFIGFFVKLIHIPINNIIVGS 68          
BLAST of FC871917 vs. ExPASy Swiss-Prot
Match: SC61G_CAEEL (Protein transport protein Sec61 subunit gamma OS=Caenorhabditis elegans GN=emo-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 37/68 (54.41%), Postives = 43/68 (63.24%), Query Frame = 3
Query:   24 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 227
            MD    + +P R F+KDS RLVKRC KPDRKE+ K+A  TAI            KLI IPINNIIVG+
Sbjct:    1 MDQFQALIEPARQFSKDSYRLVKRCTKPDRKEYQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGA 68          
BLAST of FC871917 vs. ExPASy Swiss-Prot
Match: SC61G_DICDI (Protein transport protein Sec61 subunit gamma OS=Dictyostelium discoideum GN=sec61g PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.351e-11
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 3
Query:   24 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 224
            MD ++    PL+DFAK+S+RL K+C KPD +EF K+A  T I            KLI IPINNI+VG
Sbjct:    1 MDILEETAAPLKDFAKNSIRLFKKCTKPDAQEFQKIALATLIGFAIMGFIGFFVKLIHIPINNILVG 67          
The following BLAST results are available for this feature:
BLAST of FC871917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SC61G_MOUSE7.854e-1356.72Protein transport protein Sec61 subunit gamma OS=M... [more]
SC61G_HUMAN7.854e-1356.72Protein transport protein Sec61 subunit gamma OS=H... [more]
SC61G_CANFA7.854e-1356.72Protein transport protein Sec61 subunit gamma OS=C... [more]
SC61G_BOVIN7.854e-1356.72Protein transport protein Sec61 subunit gamma OS=B... [more]
SC61G_CIOIN1.340e-1257.35Protein transport protein Sec61 subunit gamma OS=C... [more]
SC61G_CAEEL1.340e-1254.41Protein transport protein Sec61 subunit gamma OS=C... [more]
SC61G_DICDI7.351e-1149.25Protein transport protein Sec61 subunit gamma OS=D... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CF04FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871917 ID=FC871917; Name=FC871917; organism=Citrus sinensis; type=EST; length=650bp
CTTCATTGAAGGTTAAAACGAAAATGGACGCCATCGACAACGTCTTCGAT
CCGCTCAGAGATTTCGCAAAAGACAGCTTGCGTCTCGTCAAGAGGTGTCA
CAAGCCCGATCGCAAAGAATTCACGAAGGTTGCGTTCCGTACGGCGATCG
GATTCGTTGTCATGGGATTCGTAGGTTTCTTCGTCAAGTTGATCTTCATC
CCTATCAACAATATTATTGTTGGATCTGGATAAGGCTGCAGAGTTGCTGG
CTTTGATGATGGAAGTTATCAGCAGATTGATTCACACCCTTCAACGAAGG
AATGAGTTAACCCGTTTAGAATTTTATTAGACAGTACCTCAAATATGCCT
TGAATCTTTTTGAATTAGACTTTATATTTGCTTTTAAGTTGACTTACTCC
GGAAATATTTTACTTTTGTCGAAAATTAGTTGTTCTTACAGATTGGAACT
TGCTACGTTAAATCATTTTGTTTACTTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAACCCCCCTTTTTTTTTGAGGGGGGTGATTAAAAAAAAAA
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