CX043284

Overview
NameCX043284
Unique NameCX043284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043284_ssr436 microsatellite CX043284_ssr436:436..447. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig723 contig Csv1_Contig723:5..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.105e-73
Identity = 133/222 (59.91%), Postives = 168/222 (75.68%), Query Frame = 3
Query:  102 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            +IA G+ G++    ++KA +AEF + ++FVFAG GS +A++KLT   A  PAGL++ ++AHAFALFV VS+ AN+SGGH+NPAVT G  VGG+IT+L  + YWIAQ LGS VACLLLKF T GL      +++G+ +   VV EI++TF LVYTVYATA DPKKG+LG IAPIAIGFIVGANILA G F G SMNPA SFGPAV S  ++ +W+YW GP IG
Sbjct:    3 KIAFGSIGDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGDFSQNWIYWAGPLIG 224          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.105e-73
Identity = 126/227 (55.51%), Postives = 169/227 (74.45%), Query Frame = 3
Query:   90 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            M   R + G   EA+HPD+++A+LAEF S  IFVFAG+GSG+A  K+    A +   L++ +LAHAFALF AVS   ++SGGHVNPAV+FGA +GG I+++R++ YWIAQLLGS+VA L+L+  T  +  S F +S GV   +  + E+VMTFGL+YTVY TA+DPK+G +  IAP+AIG IVGANIL GG FDGA MNPA++FGP++V W W  HW++W+GP +GA
Sbjct:    1 MATRRYSFGRTDEATHPDSMRASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGAVSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQWHQHWIFWVGPLLGA 227          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 4.105e-73
Identity = 135/222 (60.81%), Postives = 168/222 (75.68%), Query Frame = 3
Query:  102 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            +I IG+ G++    +LKA L+EF + ++FVFAG GS +AF+KLT   A  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT++    YWIAQ LGS+VACLLL F T G       +++G+ +   VV EIV+TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G SMNPA SFGPAVVS  ++  W+YW+GP +G
Sbjct:    3 KIEIGSVGDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVG 224          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 9.145e-73
Identity = 136/222 (61.26%), Postives = 170/222 (76.58%), Query Frame = 3
Query:  102 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            ++A G+  ++    +LKA +AEF + ++FVFAG GS +A+S+LT GGA  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVTFG  VGGHIT+L  ILYW+AQLLG+ VAC LL++ T G       + SG+S    VV EIV+TF LVYTVYATA DPKKG+LGTIAP+AIGFIVGANILA G F G SMNPA SFGPAV +  +  +WVYW+GP +G
Sbjct:    3 KLAFGSFRDSLSAASLKAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVTHGQAIPTHGV-SGISEIEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLVG 223          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 2.661e-72
Identity = 132/221 (59.73%), Postives = 166/221 (75.11%), Query Frame = 3
Query:  105 IAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            +A G+  ++    +L+A LAEF S ++FVFAG GS +A++KLT   A    GL++ ++ H FALFVAV++GANISGGHVNPAVTFG  VGG IT++  + YWIAQLLGS  AC LLK+ TGGL     ++++G+ S   VV EI++TF LVYTVYATA DPKKG+LGTIAP+AIG IVGANILA G F G SMNPA SFGPAV +  ++ HWVYW+GP IG
Sbjct:    4 VAFGSFDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIG 224          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.018e-71
Identity = 133/221 (60.18%), Postives = 166/221 (75.11%), Query Frame = 3
Query:  105 IAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            IA G   ++    +LKA +AEF S ++FVFAG GS +A++KLT G    PAGL++ ++ H F LFVAV++GANISGGHVNPAVTFG  +GG IT+L  + YWIAQLLG++V  +L++F T G+ T    L SGV ++  VV EI++TFGLVYTVYATA DPKKG+LGTIAPIAIGFIVGANIL  G F G SMNPA SFGPAV S  +T  W+YW+GP +G
Sbjct:    5 IAFGRFDDSFSAASLKAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCT-GVATPTHGL-SGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGDYTNIWIYWVGPLVG 223          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.670e-66
Identity = 123/222 (55.41%), Postives = 157/222 (70.72%), Query Frame = 3
Query:  102 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            +I +G   EA+ PD +KA + EF +  +FVFAG GS MA   L     +T  GL + ++AHAF + V +S G +ISGGH+NPAVT G  +GGHI++ R+ LYWI QLL S  AC LL + TGG+ T    L+SGVS    +++EI++TF L++TVYAT VDPKKG+L    P+  GF+VGANILAGGAF GASMNPA SFGPA+VS  WT HWVYW+GP IG
Sbjct:    3 KIELGHHSEAAKPDCIKALIVEFITTFLFVFAGVGSAMATDSLV---GNTLVGLFAVAVAHAFVVAVMISAG-HISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIG 220          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 7.262e-62
Identity = 121/212 (57.08%), Postives = 150/212 (70.75%), Query Frame = 3
Query:  138 PDALKAALAEFFSMIIFVFAGQGSGMAFSKL-TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            P A +AAL+EF +  +FVFA +GS     K+  D G  T  GL+  ++AHA AL  AV+V  N SGGHVNPAVTFG  VG  I+  R+ LYW AQLLG+V+A LLL+ ++GG+    F L   +   +A++ E+VMTFGLVYTVYATAVD + G  G IAP+AIG + GANILAGG FDGA+MNPA +FGPA+V W W  HWVYWLGP IGA
Sbjct:   25 PGATRAALSEFVATAVFVFAAEGSVYGLWKMYRDTG--TLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGG-GDIAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWNWRHHWVYWLGPLIGA 233          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.309e-58
Identity = 114/223 (51.12%), Postives = 144/223 (64.57%), Query Frame = 3
Query:  102 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF-STGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            + A+G   EAS    ++A LAE     +FVFAG GS MA  KL  GG  T  GL + +LAH   + V VS G ++SGGH+NPAVT G    G ITL RS LY  AQLLGS +ACLLL F +         AL +GV +   V+ E V+TF L++ VYAT VDP++  +G + P+ +G +VGAN+LAGG F GASMNPA SFGPA+V+  W  HWVYW+GP IG
Sbjct:    3 KFALGHHREASDAGCVRAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLACLLLAFLAVADSGVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRRA-VGGMGPLLVGLVVGANVLAGGPFSGASMNPARSFGPALVAGVWADHWVYWVGPLIG 224          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.851e-57
Identity = 115/223 (51.57%), Postives = 148/223 (66.37%), Query Frame = 3
Query:  102 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLE-TSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            ++A+G   EA+ P  L+A +AE     +FVF+G GS MA +KL  GG  T  GL + + AHA  + V VS G ++SGGH+NPAVT G   GGHITL RS LY  AQLLGS +ACLLL   TGG E     A + GV +  AV  E V+TF L++ VYAT VD ++  +G + P+ +G +VGANILAGG + GASMNPA SFGPA+ +  W  HW+YW+GP IG
Sbjct:    3 KLALGHHREATDPGCLRAVVAELLLTFLFVFSGVGSAMAAAKL-GGGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTGGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRA-VGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPALAAGEWADHWIYWVGPLIG 223          
The following BLAST results are available for this feature:
BLAST of CX043284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
TIP_ANTMA4.105e-7359.91Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIPA_PHAVU4.105e-7355.51Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP22_ARATH4.105e-7360.81Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP23_MAIZE9.145e-7361.26Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP21_ARATH2.661e-7259.73Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP22_ORYSJ5.018e-7160.18Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP41_ARATH1.670e-6655.41Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP32_ORYSJ7.262e-6257.08Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE8.309e-5851.12Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
TIP43_ORYSJ1.851e-5751.57Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A11-B22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043284 ID=CX043284; Name=CX043284; organism=Citrus sinensis; type=EST; length=770bp
AACGGAGCACAAAACAGAGCCAGCAAGCTTGTAAGAAGCCTTTTGAGCTA
AAACAATATCGTTTTTCTTTGACAAAATTTTCGATAAAAATGCCAATCTA
CAGAATTGCCATCGGCACGCCGGGAGAGGCAAGCCATCCTGATGCGTTAA
AGGCGGCTCTAGCTGAGTTTTTCTCGATGATTATTTTTGTTTTCGCCGGC
CAGGGATCCGGGATGGCCTTTAGCAAGCTAACGGATGGCGGGGCGTCCAC
GCCGGCCGGTCTTATATCTGCATCACTGGCTCATGCATTTGCCCTATTTG
TAGCTGTTTCAGTTGGTGCAAATATTTCTGGGGGTCACGTGAACCCAGCT
GTGACATTTGGTGCATTTGTTGGAGGCCACATTACATTGTTGAGGAGCAT
CCTGTATTGGATTGCACAGTTGCTAGGATCAGTTGTTGCTTGCTTGCTGC
TCAAGTTTTCCACCGGTGGATTGGAAACATCGGCATTCGCACTATCATCT
GGCGTCTCATCATGGAATGCAGTTGTCTTTGAGATTGTGATGACCTTTGG
CTTGGTCTACACAGTGTATGCAACAGCAGTGGATCCAAAGAAGGGAAATC
TGGGCACTATTGCACCAATTGCAATCGGTTTCATTGTTGGTGCCAACATT
TTGGCTGGTGGCGCTTTTGATGGTGCATCAATGAACCCAGCAGTCTCTTT
TGGCCCTGCTGTGGTTAGCTGGACTTGGACTACCCACTGGGTCTACTGGC
TTGGACCATTTATTGGCGCC
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