CX043284

Overview
NameCX043284
Unique NameCX043284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043284_ssr436 microsatellite CX043284_ssr436:436..447. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig723 contig Csv1_Contig723:5..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.994e-52
Identity = 110/223 (49.33%), Postives = 135/223 (60.54%), Query Frame = 3
Query:  102 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAG-LISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            ++ +G  GEAS PD  +  L E     +FVF G G+ M     T G  ST  G L + +L  A  + V  + G +ISGGHVNPAVT    VGGH+TL RS LY  AQ+L S  AC LL++ TGGL T   AL+ GV     VV E V TF L++ +YAT +DP+K  L    P+  G +VGAN +AG A  GASMNPA SFGPAV S  WT HWVYW+GP  G
Sbjct:    3 KLTLGHRGEASEPDFFRGVLGELVLTFLFVFIGVGAAMTDGATTKG--STAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRK-LLPGAGPLLTGLLVGANSVAGAALSGASMNPARSFGPAVASGVWTHHWVYWVGPLAG 222          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.589e-51
Identity = 104/217 (47.93%), Postives = 140/217 (64.52%), Query Frame = 3
Query:  126 EASHPDA--LKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP-AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            EA  PD   ++A LAE     +FVF G  + MA       G + P A L + ++AHA A  V V+ G ++SGGH+NPAVT G  V GHIT LR++LY  AQLL S +AC+LL++ +GG+ T   AL +G+     +V E+++TF L++  YA  +DP +  + TI P+  G IVGAN LAGG F GASMNPA SFGPA+ +  WT HWVYW+GP +G
Sbjct:   16 EAPAPDVGCVRAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATGVWTNHWVYWIGPLLG 231          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.678e-50
Identity = 101/208 (48.56%), Postives = 134/208 (64.42%), Query Frame = 3
Query:  147 LKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP-AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            ++A LAE     +FVF G  + MA       G + P A L + ++AHA A  V V+ G ++SGGH+NPAVT G  V GHIT LR++LY  AQLL S  AC+LL+F +GG+ T   AL  G+S    +V E+++TF L++  YA  +DP +  +  I P+  G IVGAN LAGG F GASMNPA SFGPA+ +  WT HWVYW+GP +G
Sbjct:   23 VRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPALATGDWTNHWVYWIGPLLG 229          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.192e-50
Identity = 103/216 (47.69%), Postives = 132/216 (61.11%), Query Frame = 3
Query:  123 GEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP-AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            GE      ++A LAE     +FVF G  + MA       GA+ P A L   ++A A A  V V+ G ++SGGH+NPAVT      GHIT  RS LY  AQLL S +AC+LL++ TGG+ T    L SG+     +V EI++TF L++ VYAT +DP+    G   P+  G IVGAN +AGG F GASMNPA SFGPA+ +  WT HW+YWLGP IG
Sbjct:   11 GEVVDAGCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPRSSVPG-FGPLLTGLIVGANTIAGGNFSGASMNPARSFGPALATGVWTHHWIYWLGPLIG 225          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.883e-50
Identity = 103/226 (45.58%), Postives = 134/226 (59.29%), Query Frame = 3
Query:   90 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            +P+ ++ +G  GEA  P  L+A   E     +FVF G  S +   K   GGA   A + +A++A A  + V  + G ++SGGH+NPAVT    VGGHITL RS LY  AQL GS +ACLLL+  TGG  T   AL+ GV     V  E V TF L+  + AT +DP++       P+  G +VGAN +AGGA  GASMNPA SFGPA+ +  W  HWVYW+GP  G
Sbjct:    4 LPMTKLELGHRGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGKAA-GGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANTVAGGALTGASMNPARSFGPALATGEWAHHWVYWVGPLAG 228          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 2.773e-45
Identity = 96/219 (43.84%), Postives = 135/219 (61.64%), Query Frame = 3
Query:  138 PDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLG--------TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            P AL+A  AEFFS  +FVF   GS ++   LT    S  + L++ ++A AF LF AV + A++SGGHVNPAVTF   +GGHIT+  +I YW +Q+LGS  ACL+L + + G       ++  ++ + A + E V+TF +VYTV+  A DP+ G  G         +  + +G + GA +LA G+  GASMNPA SFGPAVVS  ++   VYW GP +GA
Sbjct:   14 PPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVH-VAGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGHYSNQAVYWAGPMVGA 231          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.550e-43
Identity = 90/209 (43.06%), Postives = 132/209 (63.16%), Query Frame = 3
Query:  141 DALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            +AL+  ++EF S   FV A  GS M+  KL  G  S P G++  ++A+A AL  +V +  N+SGGHVNPAVTF   V G I++  ++ YW +Q++ SV+ACL+LK +        + ++  ++ + A V E V+ F LVYTV+ TA DP++G    + PI IGF+ GAN+LA G F G SMNPA +FG A+V  ++    VYW+GP +G
Sbjct:   20 NALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLAFVLVYTVF-TASDPRRGLPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAMVYGSFKNQAVYWVGPLLG 227          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.581e-40
Identity = 91/219 (41.55%), Postives = 127/219 (57.99%), Query Frame = 3
Query:  144 ALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAG-LISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLG---------TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            +L++ LAEF S  +FVF   GS ++   LT    ++ AG L++ ++A AF LF AV + A++SGGHVNPAVTF   +GG I +  ++ YW +QLLG+  ACL L   + G E     ++  ++ +   V E V+TF LVYTV+       +   G          +  +A+G   GA +LA GA  GASMNPA SFGPAVVS  +    VYW GP +GA
Sbjct:   18 SLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARSFGPAVVSGHFKNQAVYWAGPMVGA 236          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.202e-34
Identity = 84/210 (40.00%), Postives = 120/210 (57.14%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            +A  AEFF+ + +VF G G+ + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+I Y +AQLLG+V    +L   T        AL++   GVS   A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++  +T HWVYW+GP IGA
Sbjct:   11 RAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGA 212          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.876e-34
Identity = 84/210 (40.00%), Postives = 120/210 (57.14%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            +A  AEFF+ + +VF G G+ + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+I Y +AQLLG+V    +L   T        AL++   GVS   A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++  +T HWVYW+GP IGA
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGA 212          
The following BLAST results are available for this feature:
BLAST of CX043284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
TIP43_MAIZE3.994e-5249.33Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP42_MAIZE2.589e-5147.93Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_MAIZE1.678e-5048.56Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP41_ORYSJ2.192e-5047.69Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP42_ORYSJ4.883e-5045.58Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP51_ORYSJ2.773e-4543.84Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP51_ARATH7.550e-4343.06Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP51_MAIZE4.581e-4041.55Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
MIP_BOVIN2.202e-3440.00Lens fiber major intrinsic protein OS=Bos taurus G... [more]
MIP_SHEEP2.876e-3440.00Lens fiber major intrinsic protein OS=Ovis aries G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A11-B22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043284 ID=CX043284; Name=CX043284; organism=Citrus sinensis; type=EST; length=770bp
AACGGAGCACAAAACAGAGCCAGCAAGCTTGTAAGAAGCCTTTTGAGCTA
AAACAATATCGTTTTTCTTTGACAAAATTTTCGATAAAAATGCCAATCTA
CAGAATTGCCATCGGCACGCCGGGAGAGGCAAGCCATCCTGATGCGTTAA
AGGCGGCTCTAGCTGAGTTTTTCTCGATGATTATTTTTGTTTTCGCCGGC
CAGGGATCCGGGATGGCCTTTAGCAAGCTAACGGATGGCGGGGCGTCCAC
GCCGGCCGGTCTTATATCTGCATCACTGGCTCATGCATTTGCCCTATTTG
TAGCTGTTTCAGTTGGTGCAAATATTTCTGGGGGTCACGTGAACCCAGCT
GTGACATTTGGTGCATTTGTTGGAGGCCACATTACATTGTTGAGGAGCAT
CCTGTATTGGATTGCACAGTTGCTAGGATCAGTTGTTGCTTGCTTGCTGC
TCAAGTTTTCCACCGGTGGATTGGAAACATCGGCATTCGCACTATCATCT
GGCGTCTCATCATGGAATGCAGTTGTCTTTGAGATTGTGATGACCTTTGG
CTTGGTCTACACAGTGTATGCAACAGCAGTGGATCCAAAGAAGGGAAATC
TGGGCACTATTGCACCAATTGCAATCGGTTTCATTGTTGGTGCCAACATT
TTGGCTGGTGGCGCTTTTGATGGTGCATCAATGAACCCAGCAGTCTCTTT
TGGCCCTGCTGTGGTTAGCTGGACTTGGACTACCCACTGGGTCTACTGGC
TTGGACCATTTATTGGCGCC
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