CX043284

Overview
NameCX043284
Unique NameCX043284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043284_ssr436 microsatellite CX043284_ssr436:436..447. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig723 contig Csv1_Contig723:5..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 5.076e-31
Identity = 75/209 (35.89%), Postives = 115/209 (55.02%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            +A +AEF +M +FVF   GS + F        +     +  SLA   ++        +ISG H+NPAVT G  +   I++ R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIG  V    L    + G  +NPA SFG AV++  ++ HW++W+GPFIG
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIG 219          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.630e-31
Identity = 87/225 (38.67%), Postives = 124/225 (55.11%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTD----GGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF--ST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTTHWVYWLGPFIGA 770
            +A +AEF + ++F++    + + F   TD    GGA    GL+  S A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++ Y +AQ LG+     L+K   ST     GG    A  LS G +    V  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V    LA     G  +NPA SFG AV+      W   W++W+GPF+GA
Sbjct:   38 RAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGG---GANMLSDGYNVGVGVGAEIIGTFVLVYTVF-SATDPKRNARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGA 258          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.630e-31
Identity = 79/214 (36.92%), Postives = 121/214 (56.54%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            KA  AEF + +IFV  G GS + +     GG+  P  +    ++  F L +A  V    +ISGGH+NPAVT        I++ +S+ Y IAQ LG+++   +L   T     GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPAV+   W  HW+YW+GP +GA
Sbjct:   36 KAVSAEFLATLIFVLLGVGSTINW-----GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGILYLVTPPSVVGGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWANHWIYWVGPIMGA 241          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.131e-30
Identity = 79/214 (36.92%), Postives = 120/214 (56.07%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            KA  AEF +M+IFV    GS + +     GG+  P  +    ++  F L +A  V    +ISGGH+NPAVT        I++ +S+ Y  AQ LG+++   +L   T     GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPAV+   W  HW+YW+GP IGA
Sbjct:   39 KAVTAEFLAMLIFVLLSVGSTINW-----GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPNVVGGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGA 244          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 1.131e-30
Identity = 80/214 (37.38%), Postives = 119/214 (55.61%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            KA  AEF +M+IFV    GS + +     GGA  P  +    ++  F L +A  V    +ISGGH+NPAVT        I++ +S+ Y  AQ LG+++   +L   T     GGL  +   +   +S+ + ++ E+++TF LV+T++A+    +    G+IA +AIG  V    L    + GASMNPA SFGPAV+   W  HW+YW+GP IGA
Sbjct:   36 KAVTAEFLAMLIFVLLSLGSTINW-----GGAEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTT--VHGNLSAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGISVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGA 241          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.477e-30
Identity = 82/226 (36.28%), Postives = 125/226 (55.31%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK------FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTTHWVYWLGPFIGA 770
            +A +AEF + ++F++    + + +   TD  AS         G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R+ILY +AQ LG++    L+K      F+  G    A  L++G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AV+      W  HW++W+GPF+GA
Sbjct:   42 RAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSAYFNRYG--GGANTLAAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGA 264          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.477e-30
Identity = 78/214 (36.45%), Postives = 120/214 (56.07%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            KA  AEF +M+IFV    GS + +     GG+  P  +    ++  F L +A  V    +ISGGH+NPAVT        I++ +S+ Y  AQ LG+++   +L   T     GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G++A +AIGF V    L    + GASMNPA SFGPAV+   W  HW+YW+GP IGA
Sbjct:   36 KAVTAEFLAMLIFVLLSVGSTINW-----GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGA 241          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.929e-30
Identity = 86/237 (36.29%), Postives = 131/237 (55.27%), Query Frame = 3
Query:  120 PGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDG---GASTPAGLISASLAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF--------ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTTHWVYWLGPFIGA 770
            P E +     +AA+AEF + ++F++    + + + + +D    G +   G+    +A AF   +F+ V   A ISGGH+NPAVTFG F+G  ++L+R++LY IAQ  G++    L K    G + S +         +S G +   A+  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V    LA     G  +NPA SFGPAV+      W   W+YW+GPF+GA
Sbjct:   30 PDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAK----GFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGA 261          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.929e-30
Identity = 79/214 (36.92%), Postives = 119/214 (55.61%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            KA  AEF +M+IFV    GS + +     GG   P  +    ++  F L +A  V    +ISGGH+NPAVT        I++ +S+ Y  AQ LG+++   +L   T     GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPAV+   W  HW+YW+GP IGA
Sbjct:   36 KAVTAEFLAMLIFVLLSLGSTINW-----GGKENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGA 241          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.519e-30
Identity = 85/222 (38.29%), Postives = 123/222 (55.41%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGS--GMAFSKLTDGGASTPAGLISASLAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTTHWVYWLGPFIGA 770
            +A +AEF + ++F++    +  G      TD G     G+    +A AF   +F+ V   A ISGGH+NPAVTFG F+   ++L R++LY IAQ LG++     +K       T     A +L+ G S+   +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V    LA     G  +NPA SFG AV+   S  W  HW++W+GPFIGA
Sbjct:   39 RAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGA 259          
The following BLAST results are available for this feature:
BLAST of CX043284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
AQP1_PONAB5.076e-3135.89Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
PIP26_ARATH6.630e-3138.67Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
AQP4_MOUSE6.630e-3136.92Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP4_NOTAL1.131e-3036.92Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_BOVIN1.131e-3037.38Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
PIP21_ORYSJ1.477e-3036.28Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
AQP4_RAT1.477e-3036.45Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
PIP27_MAIZE1.929e-3036.29Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
AQP4_DIPME1.929e-3036.92Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
PIP21_ARATH2.519e-3038.29Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A11-B22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043284 ID=CX043284; Name=CX043284; organism=Citrus sinensis; type=EST; length=770bp
AACGGAGCACAAAACAGAGCCAGCAAGCTTGTAAGAAGCCTTTTGAGCTA
AAACAATATCGTTTTTCTTTGACAAAATTTTCGATAAAAATGCCAATCTA
CAGAATTGCCATCGGCACGCCGGGAGAGGCAAGCCATCCTGATGCGTTAA
AGGCGGCTCTAGCTGAGTTTTTCTCGATGATTATTTTTGTTTTCGCCGGC
CAGGGATCCGGGATGGCCTTTAGCAAGCTAACGGATGGCGGGGCGTCCAC
GCCGGCCGGTCTTATATCTGCATCACTGGCTCATGCATTTGCCCTATTTG
TAGCTGTTTCAGTTGGTGCAAATATTTCTGGGGGTCACGTGAACCCAGCT
GTGACATTTGGTGCATTTGTTGGAGGCCACATTACATTGTTGAGGAGCAT
CCTGTATTGGATTGCACAGTTGCTAGGATCAGTTGTTGCTTGCTTGCTGC
TCAAGTTTTCCACCGGTGGATTGGAAACATCGGCATTCGCACTATCATCT
GGCGTCTCATCATGGAATGCAGTTGTCTTTGAGATTGTGATGACCTTTGG
CTTGGTCTACACAGTGTATGCAACAGCAGTGGATCCAAAGAAGGGAAATC
TGGGCACTATTGCACCAATTGCAATCGGTTTCATTGTTGGTGCCAACATT
TTGGCTGGTGGCGCTTTTGATGGTGCATCAATGAACCCAGCAGTCTCTTT
TGGCCCTGCTGTGGTTAGCTGGACTTGGACTACCCACTGGGTCTACTGGC
TTGGACCATTTATTGGCGCC
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