CX043284

Overview
NameCX043284
Unique NameCX043284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043284_ssr436 microsatellite CX043284_ssr436:436..447. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig723 contig Csv1_Contig723:5..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.633e-29
Identity = 82/227 (36.12%), Postives = 121/227 (53.30%), Query Frame = 3
Query:  123 GEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVAC----LLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTTHWVYWLGPFIGA 770
            GE       +A +AEF + ++F++    + +   K T  G     GL+  + A    +FV V   A ISGGH+NPAVTFG F+   ++L+R++ Y IAQ LG++         +K     L   A  ++ G S   A+  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V    LA     G  +NPA SFG AV+      W   W++W+GPF+GA
Sbjct:   29 GELKSWSFYRALIAEFIATLLFLYVTVATVIGHKKQT--GPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGA 252          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.133e-29
Identity = 78/224 (34.82%), Postives = 121/224 (54.02%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTTHWVYWLGPFIGA 770
            +A +AEF + ++F++    + + +   +D GA+         G++  + A    +F+ V   A +SGGH+NPAVTFG F+   ++L+R++LY +AQ LG++    L+K             A  LS G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AV+      W  HW++W+GP IGA
Sbjct:   42 RAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVKGFQSAFYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNQHKAWHDHWIFWVGPLIGA 264          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.133e-29
Identity = 81/225 (36.00%), Postives = 126/225 (56.00%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTD---GGASTPA-GLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-------FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTTHWVYWLGPFIGA 770
            +A +AEF + ++F++    + + +   +D   GG      G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY +AQ LG++     +K        + GG    A  L+ G ++   +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V    LA     G  +NPA SFG AV+   S  W  HW++W+GPFIGA
Sbjct:   37 RAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGG---GANFLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGA 257          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.785e-29
Identity = 80/218 (36.70%), Postives = 120/218 (55.05%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK----FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTTHWVYWLGPFIGA 770
            +A +AEF + ++F++    + +     T  G     GL+  + A    +FV V   A ISGGH+NPAVTFG F+   ++L R++ Y +AQ LG++    L+K         L   A  ++ G S+  A+  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V    LA     G  +NPA SFG AV+      W  HW++W+GPF+GA
Sbjct:   36 RAIIAEFIATLLFLYVTVATVIGHKNQT--GPCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGA 250          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.785e-29
Identity = 80/228 (35.09%), Postives = 124/228 (54.39%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA--------LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTTHWVYWLGPFIGA 770
            +A +AEF + ++F++    + + +   +D   +T        G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY IAQ LG++    L+K    G ++S +A        LS G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AV+      W   W++W+GP IGA
Sbjct:   41 RAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVK----GFQSSYYARYGGGANELSDGYSKGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGA 263          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP8_RAT (Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.751e-29
Identity = 80/220 (36.36%), Postives = 115/220 (52.27%), Query Frame = 3
Query:  123 GEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTG-----GLETSAFALSSGVSSW-NAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFI 764
            G + +   ++  + E     +F+F G  S +  S  T        GL+  +LAH  AL + ++   NISGGH NPAV+    + G +  +  I YW++QL G ++   L K  +          +AFA+         A+  EIVMT  LV  V   AV+ K   +G +AP +IGF V  +ILAGG   GA MNPA +FGPAV++  W  HW+YWLGP +
Sbjct:   29 GMSWYEQYIQPCVVELLGSALFIFIGCLSVIENSPNT--------GLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTLVGGLKTMLLIPYWVSQLFGGMIGAALAKVVSPEERFWNASGAAFAIVQEQEQVAEALGVEIVMTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVMAGYWDFHWIYWLGPLL 238          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.751e-29
Identity = 76/212 (35.85%), Postives = 117/212 (55.19%), Query Frame = 3
Query:  147 LKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLL---LKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTT-HWVYWLGPFIGA 770
            LKA  AEF + +IFVF G GS + +        S    ++  SLA   A+         +SGGH+NPA+T    VG  I+LLR++ Y +AQL+G++    +   L         +  AL++  ++  AVV E+++TF L   V+++    +   +G+ A ++IG  V    L G  F G SMNPA SFGPAV+   +++ HWV+W+GP +GA
Sbjct:   11 LKAVFAEFLATLIFVFFGLGSALKWP-------SAMPSVLQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGLAPYNARSNLAVNALNNNTTAGQAVVAEMILTFQLALCVFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVIMSRFSSAHWVFWVGPIVGA 214          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP8_NOTAL (Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.205e-29
Identity = 79/212 (37.26%), Postives = 112/212 (52.83%), Query Frame = 3
Query:  147 LKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTG-----GLETSAFALSSGVSS-WNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFI 764
            ++  + E     +F+F G  S +  S  T        GL+  +LAH  AL + ++   NISGGH NPAV+    V G +  +  I YWI+Q+ G ++   L K  +          +AFA+         A+  EI++T  LV  V   AV+ K   +G +AP +IGF V  +ILAGG   GA MNPA +FGPAVV+  W  HW+YWLGP +
Sbjct:   35 IQPCVVELLGSALFIFIGCLSVIENSPDT--------GLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTVIGGLKTMLLIPYWISQIFGGLIGAALAKVVSPEERFWNASGAAFAIVQEQEQVTEALGVEIILTILLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVVAGYWDFHWIYWLGPLL 236          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP8_MOUSE (Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.205e-29
Identity = 79/212 (37.26%), Postives = 113/212 (53.30%), Query Frame = 3
Query:  147 LKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTG-----GLETSAFALSSGVSSW-NAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFI 764
            ++  + E     +F+F G  S +  S  T        GL+  +LAH  AL + ++   NISGGH NPAV+    V G +  +  I YWI+QL G ++   L K  +          +AFA+         A+  EI++T  LV  V   AV+ K   +G +AP +IGF V  +ILAGG+  GA MNPA +FGPAV++  W  HW+YWLGP +
Sbjct:   35 VQPCIVELVGSALFIFIGCLSVIENSPNT--------GLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTVIGGLKTMLLIPYWISQLFGGLIGAALAKVVSPEERFWNASGAAFAIVQEQEQVAEALGIEIILTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGSISGACMNPARAFGPAVMAGYWDFHWIYWLGPLL 236          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.205e-29
Identity = 83/214 (38.79%), Postives = 120/214 (56.07%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            +A  AEF + ++FVF G GS + + +      + P+ L    +A AF L +   V A  +ISG H+NPAVT    VG H+++LR+  Y  AQLLG+V    LL   T     G L  +A  LS+  ++  AV  E+ +T  LV  ++A+  + +  N GT A ++IGF V    L G  + G SMNPA S  PAVV+  +  HWV+W+GP +GA
Sbjct:   11 RAVFAEFLATLLFVFFGLGSALNWPQ------ALPSVL---QIAMAFGLGIGTLVQALGHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALLHEITPADIRGDLAVNA--LSNSTTAGQAVTVELFLTLQLVLCIFASTDERRGENPGTPA-LSIGFSVALGHLLGIHYTGCSMNPARSLAPAVVTGKFDDHWVFWIGPLVGA 212          
The following BLAST results are available for this feature:
BLAST of CX043284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
PIP27_ARATH1.633e-2936.12Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP23_ORYSJ2.133e-2934.82Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP23_ARATH2.133e-2936.00Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP28_ARATH2.785e-2936.70Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP22_ORYSJ2.785e-2935.09Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
AQP8_RAT4.751e-2936.36Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1[more]
AQP5_SHEEP4.751e-2935.85Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
AQP8_NOTAL6.205e-2937.26Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1[more]
AQP8_MOUSE6.205e-2937.26Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1[more]
AQP2_HUMAN6.205e-2938.79Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A11-B22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043284 ID=CX043284; Name=CX043284; organism=Citrus sinensis; type=EST; length=770bp
AACGGAGCACAAAACAGAGCCAGCAAGCTTGTAAGAAGCCTTTTGAGCTA
AAACAATATCGTTTTTCTTTGACAAAATTTTCGATAAAAATGCCAATCTA
CAGAATTGCCATCGGCACGCCGGGAGAGGCAAGCCATCCTGATGCGTTAA
AGGCGGCTCTAGCTGAGTTTTTCTCGATGATTATTTTTGTTTTCGCCGGC
CAGGGATCCGGGATGGCCTTTAGCAAGCTAACGGATGGCGGGGCGTCCAC
GCCGGCCGGTCTTATATCTGCATCACTGGCTCATGCATTTGCCCTATTTG
TAGCTGTTTCAGTTGGTGCAAATATTTCTGGGGGTCACGTGAACCCAGCT
GTGACATTTGGTGCATTTGTTGGAGGCCACATTACATTGTTGAGGAGCAT
CCTGTATTGGATTGCACAGTTGCTAGGATCAGTTGTTGCTTGCTTGCTGC
TCAAGTTTTCCACCGGTGGATTGGAAACATCGGCATTCGCACTATCATCT
GGCGTCTCATCATGGAATGCAGTTGTCTTTGAGATTGTGATGACCTTTGG
CTTGGTCTACACAGTGTATGCAACAGCAGTGGATCCAAAGAAGGGAAATC
TGGGCACTATTGCACCAATTGCAATCGGTTTCATTGTTGGTGCCAACATT
TTGGCTGGTGGCGCTTTTGATGGTGCATCAATGAACCCAGCAGTCTCTTT
TGGCCCTGCTGTGGTTAGCTGGACTTGGACTACCCACTGGGTCTACTGGC
TTGGACCATTTATTGGCGCC
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