CX043284

Overview
NameCX043284
Unique NameCX043284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043284_ssr436 microsatellite CX043284_ssr436:436..447. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig723 contig Csv1_Contig723:5..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.104e-29
Identity = 81/224 (36.16%), Postives = 124/224 (55.36%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDG---GASTPAGLISA-SLAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTTHWVYWLGPFIGA 770
            +A +AEF + ++F++    + + +   TD    GA    G +    +A AF   +F+ V   A +SGGH+NPAVT G F+   ++L+R++LY  AQ LG++    L+K     L       A  L++G S+   +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AVV   +  W+  W++W+GPFIGA
Sbjct:   39 RALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSSLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGA 261          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.058e-28
Identity = 76/211 (36.02%), Postives = 116/211 (54.98%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGL---ETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWT-THWVYWLGPFIGA 770
            KA  AEF + +IFVF G GS + +        S    ++  S+A   A+         +SGGH+NPA+T    +G  I+LLR+I Y  AQL+G++    +L +   G      +  ALS+  +   AVV E+++TF L   ++++    +   +G+ A ++IG  V    L G  F G SMNPA SFGPAVV   ++ +HWV+W+GP +GA
Sbjct:   12 KAVFAEFLATLIFVFFGLGSALKWP-------SALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPGNARGNLAVNALSNNTTPGKAVVVELILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWVGPIVGA 214          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.382e-28
Identity = 75/220 (34.09%), Postives = 121/220 (55.00%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK------FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTTHWVYWLGPFIGA 770
            +A +AEF + ++F++    + + +   +        G +  + A    +F+ V   A ISGGH+NPAVTFG  +   ++++R+++Y +AQ LG +V   ++K      ++  G    A  ++SG S+  A+  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AV+      W  HW++W GPFIGA
Sbjct:   38 RALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANG--GGANMVASGYSTGTALGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGA 254          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.805e-28
Identity = 78/222 (35.14%), Postives = 119/222 (53.60%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP----AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTTHWVYWLGPFIGA 770
            +A +AEF + ++F++    + + +   TD  A        G++  + A    +FV V   A ISGGH+NPAVT G F+   ++L+R++LY +AQ LG++  C  +K       T     A  L+ G +    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V    LA     G  +NPA SFG AV+      W   W++W+GP IGA
Sbjct:   39 RAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGA 259          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.861e-28
Identity = 73/182 (40.11%), Postives = 106/182 (58.24%), Query Frame = 3
Query:  237 GGASTPAGLISASLAHAFALFVA-VSVG-ANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWN---AVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIG 767
            G  ST +G +   +A  F L VA ++ G  ++SG H+NPAVT G  + G I++L++  Y I Q +G++    ++K +  G+      +SS   S N   AV+ E ++TF LV+ V A + DP + ++   AP+A+G  + A  L      GASMNPA SFGPAVV   WT HWVYW+GP  G
Sbjct:   40 GVGSTTSGSVP-QIAFTFGLTVATIAQGLGHLSGCHINPAVTLGFLIVGEISILKAAFYIIVQCVGAIAGAAVIKVALDGVAGGDLGVSSFDPSLNCAQAVLIEALITFILVFVVKAVS-DPGRQDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQGVWTYHWVYWVGPIAG 219          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 8.961e-28
Identity = 87/263 (33.08%), Postives = 132/263 (50.19%), Query Frame = 3
Query:   60 RFSLTKFSIKMPIYRIAIGT---------------PGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLETS---AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTTHWVYWLGPFIGA 770
            R    KFS + PI   A G+               PGE       +A +AEF +  +F++    + M  +  T   A+   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K F  G  ET+   A  ++ G +  + +  EIV TF LVYTV+ +A D K+     ++  +AP+ IGF V    LA     G  +NPA S G A++      W  HW++W+GPFIGA
Sbjct:    9 RLGANKFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGA 268          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.961e-28
Identity = 74/213 (34.74%), Postives = 118/213 (55.40%), Query Frame = 3
Query:  150 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF-----STGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWT-THWVYWLGPFIGA 770
            KA  AEF + +IFVF G GS + +        S    ++  S+A   A+         +SGGH+NPA+T    +G  I+LLR++ Y  AQL+G++    +L +     + G L  +  AL++  +   A+V E+++TF L   ++++    +   +G+ A ++IG  V    L G  F G SMNPA SFGPAVV   ++ +HWV+W+GP +GA
Sbjct:   12 KAVFAEFLATLIFVFFGLGSALKWP-------SALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGILYWLAPLNARGNLAVN--ALNNNTTPGKAMVVELILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWVGPIVGA 214          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.961e-28
Identity = 75/212 (35.38%), Postives = 118/212 (55.66%), Query Frame = 3
Query:  147 LKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVV-ACLLLKFSTGGL--ETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWT-THWVYWLGPFIGA 770
            LKA  AEF + +IFVF G  S + +        S    ++  +LA   A+         +SGGH+NPA+T    VG  I+LLR++ Y +AQL+G++  A +L   + G      +  +L++  +   AVV E+++TF L   ++++    +   +G+ A ++IG  V    L G  F G SMNPA SFGPAVV   ++ +HWV+W+GP +GA
Sbjct:   11 LKAVFAEFLATLIFVFFGLASALKWP-------SALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPGNARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWVGPIVGA 214          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.961e-28
Identity = 76/213 (35.68%), Postives = 115/213 (53.99%), Query Frame = 3
Query:  147 LKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWT-THWVYWLGPFIGA 770
            LKA  AEF + +IFVF G GS + +        S    ++  +LA   A+         +SGGH+NPA+T    VG  I+LLR+  Y  AQL+G++    +L +    L      +  AL++  +   A+V E+++TF L   ++A+    +   +G+ A ++IG  V    L G  F G SMNPA SFGPAVV   ++  HWV+W+GP +GA
Sbjct:   11 LKAVFAEFLATLIFVFFGLGSALKWP-------SALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGIL-YGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGA 214          
BLAST of CX043284 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.170e-27
Identity = 76/210 (36.19%), Postives = 111/210 (52.86%), Query Frame = 3
Query:  159 LAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF----STGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTTHWVYWLGPFIGA 770
            +AE       V  G GS       T G   +P+      +A  F L VA    A  +ISG H+NPAVT G  + G +++++S+LY   Q +G++    ++K     +  GL+    + SS ++   AV+ E ++TF LV  V   + DP + ++   AP+A+G  + A  L      GASMNPA SFGPAVV   W  HWVYW+GP +GA
Sbjct:   27 MAELIGTFFLVVIGVGS------CTGGSEWSPS---IPQIAFTFGLTVATLAQAIGHISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIKVGVSEAVSGLDLGVSSFSSTLTVGQAVLIEALITFILVVVVKGVS-DPGRTDIKGSAPLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQNMWIDHWVYWVGPIVGA 226          
The following BLAST results are available for this feature:
BLAST of CX043284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
PIP24_ORYSJ8.104e-2936.16Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
AQP5_MOUSE1.058e-2836.02Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
PIP26_ORYSJ1.382e-2834.09Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP24_ARATH1.805e-2835.14Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
AQP_DROME6.861e-2840.11Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
PIP12_ORYSJ8.961e-2833.08Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
AQP5_RAT8.961e-2834.74Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQP5_PIG8.961e-2835.38Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQP5_HUMAN8.961e-2835.68Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
AQP_HAEIX1.170e-2736.19Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A11-B22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043284 ID=CX043284; Name=CX043284; organism=Citrus sinensis; type=EST; length=770bp
AACGGAGCACAAAACAGAGCCAGCAAGCTTGTAAGAAGCCTTTTGAGCTA
AAACAATATCGTTTTTCTTTGACAAAATTTTCGATAAAAATGCCAATCTA
CAGAATTGCCATCGGCACGCCGGGAGAGGCAAGCCATCCTGATGCGTTAA
AGGCGGCTCTAGCTGAGTTTTTCTCGATGATTATTTTTGTTTTCGCCGGC
CAGGGATCCGGGATGGCCTTTAGCAAGCTAACGGATGGCGGGGCGTCCAC
GCCGGCCGGTCTTATATCTGCATCACTGGCTCATGCATTTGCCCTATTTG
TAGCTGTTTCAGTTGGTGCAAATATTTCTGGGGGTCACGTGAACCCAGCT
GTGACATTTGGTGCATTTGTTGGAGGCCACATTACATTGTTGAGGAGCAT
CCTGTATTGGATTGCACAGTTGCTAGGATCAGTTGTTGCTTGCTTGCTGC
TCAAGTTTTCCACCGGTGGATTGGAAACATCGGCATTCGCACTATCATCT
GGCGTCTCATCATGGAATGCAGTTGTCTTTGAGATTGTGATGACCTTTGG
CTTGGTCTACACAGTGTATGCAACAGCAGTGGATCCAAAGAAGGGAAATC
TGGGCACTATTGCACCAATTGCAATCGGTTTCATTGTTGGTGCCAACATT
TTGGCTGGTGGCGCTTTTGATGGTGCATCAATGAACCCAGCAGTCTCTTT
TGGCCCTGCTGTGGTTAGCTGGACTTGGACTACCCACTGGGTCTACTGGC
TTGGACCATTTATTGGCGCC
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