CV998077

Overview
NameCV998077
Unique NameCV998077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV998077_ssr5 microsatellite CV998077_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
CV998077_ssr255 microsatellite CV998077_ssr255:255..266. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10123 contig Csv1_Contig10123:264..1095. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998077 vs. ExPASy Swiss-Prot
Match: Y1479_METJA (Uncharacterized aminotransferase MJ1479 OS=Methanocaldococcus jannaschii GN=MJ1479 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 61/249 (24.50%), Postives = 112/249 (44.98%), Query Frame = 1
Query:   85 YAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL-VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 828
            Y +R EIV +A++++ E   N        I + NIG+P + G++   + ++++A                             + +    + AY  ++G+   R+ +A  +  R G      DI   +G   A+  +  LL R     ++ P P Y  +S++ A H G+  V Y+LD    W  +  +++K+++   A    V  ++VINP NPTG V  ++    IV+   +  L ++ DE+Y   VY
Sbjct:   15 YEIR-EIVDVAKKIE-EFGIN--------ITWENIGDPVAKGEKIPDWIKDIIA-----------------------------EIVKNDCSYAYCPTKGLLETREFLAEQVNKRGGVQITAEDIIFFNGLGDAIAKIYGLLKRQVR--VINPSPSYSTHSSAEASHAGSPPVTYFLDPYNYWYPDIDDLEKRIKYNPA----VSGILVINPDNPTGAVYPKKILNEIVDLANEYDLFIICDEIYCNLVY 218          
BLAST of CV998077 vs. ExPASy Swiss-Prot
Match: 1A1C_PHAAU (1-aminocyclopropane-1-carboxylate synthase (Fragment) OS=Phaseolus aureus GN=ACS5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 43/163 (26.38%), Postives = 75/163 (46.01%), Query Frame = 1
Query:  349 RATGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 828
            RA   +    G+   R+ +A  +    G     DP+ I ++ GA+ A H +    +    +  L PIP YP +   +    G  LVP   D +  + L    ++   E A+   I V+ L++ NP NP G ++  +  R +V F  ++ + L+ DE+Y   V+
Sbjct:   36 RAIANFQDYHGLAEFRNAVAKFMARTRGNRITFDPDRIVMSGGATGA-HEVTAFCLADPGEAFLVPIPYYPGFDRDLRWRTGVKLVPVMCDSSNNFVLTKEALEDAYEKAREDNIRVKGLLITNPSNPLGTIMDRKTLRTVVSFINEKRIHLVCDEIYAATVF 197          
BLAST of CV998077 vs. ExPASy Swiss-Prot
Match: 1A12_SOLLC (1-aminocyclopropane-1-carboxylate synthase 2 OS=Solanum lycopersicum GN=ACS2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.278e-11
Identity = 40/163 (24.54%), Postives = 76/163 (46.63%), Query Frame = 1
Query:  349 RATGAYSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 828
            +A   +    G+   R  IA  +E   G     DP  + +  GA+ A   ++   +    D  L P P YP ++  +    G  L+P + + +  + + +  VK+  E A+   I V+ L++ NP NP G  L ++  ++++ F  +  + L+ DE+Y   V+
Sbjct:   84 KAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETII-FCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF 245          
BLAST of CV998077 vs. ExPASy Swiss-Prot
Match: 1A11_PRUMU (1-aminocyclopropane-1-carboxylate synthase 1 OS=Prunus mume GN=ACS1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.278e-11
Identity = 36/130 (27.69%), Postives = 63/130 (48.46%), Query Frame = 1
Query:  442 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 828
            DPN + ++ GA+ A  ++M   +    D  L P P YP +   +    G  +VP   D +  + +    ++   E A+   I V+ L++ NP NP G  L      ++VEF  ++ + L+ DE+Y   V+
Sbjct:  119 DPNRVVMSGGATGANELVM-FCLADPGDAFLVPSPYYPAFFRDLGWRTGVQIVPVDCDSSNNFKITKEALEAAYEKAQKNNINVKGLIITNPSNPLGTTLDRNTLESLVEFINQKNIHLVCDEIYAATVF 247          
BLAST of CV998077 vs. ExPASy Swiss-Prot
Match: AAT_BACY2 (Aspartate aminotransferase OS=Bacillus sp. (strain YM-2) PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.976e-11
Identity = 41/158 (25.95%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  364 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV---RALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 828
            Y+ S G+  L+  I    +  +     PN+I +  GA   ++ + Q+++ +E D ++ PIP +  Y   + L GG  VP Y++        TSE   ++ A + K       +A+++ +P NPTG V   E    I +   +  +++++DE+Y++ +Y
Sbjct:   65 YTPSGGLPALKQAIIEKFKRDNQLEYKPNEIIVGVGAKHVLYTLFQVIL-NEGDEVIIPIPYWVSYPEQVKLAGG--VPVYIEA-------TSEQNYKITAEQLKNAITDKTKAVIINSPSNPTGMVYTREELEDIAKIALENNILIVSDEIYEKLLY 212          
BLAST of CV998077 vs. ExPASy Swiss-Prot
Match: 1A1C_TOBAC (1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum GN=ACS1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.976e-11
Identity = 42/163 (25.77%), Postives = 73/163 (44.79%), Query Frame = 1
Query:  349 RATGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 828
            RA   +    G+   R  IA  +E   G     DP  + +  GA+ A   ++   +    D  L P P YP ++  +    G  L+P   D +  + + T  V++  E A+   I V+ L++ NP NP G  L  +  + ++ F  +  + L+ DE+Y   V+
Sbjct:   85 RAIANFQDYHGLPEFRSAIAKFMEKTRGGRVTFDPERVVMAGGATGANETII-FCLADTGDAFLVPSPYYPAFNRDLRWRTGVQLIPIPCDSSNNFQITTKAVREAYENAQKSNIKVKGLILTNPSNPLGTTLDRDTLKNLLTFTNQHNIHLVCDEIYAATVF 246          
BLAST of CV998077 vs. ExPASy Swiss-Prot
Match: 1A13_SOLLC (1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.976e-11
Identity = 36/130 (27.69%), Postives = 67/130 (51.54%), Query Frame = 1
Query:  442 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH-GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 828
            D N++ LT GA+ A   +M   + ++ D  L P P YP +   +    G  +VP +   + G+ +  S +++    AK + + V+ ++V NP NP G  L       ++ F  ++G+ L++DE+Y   V+
Sbjct:  110 DSNNLVLTAGATSANETLM-FCLANQGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFRITESALEEAYLDAKKRNLKVKGVLVTNPSNPLGTTLNRNELELLLTFIDEKGIHLISDEIYSGTVF 238          
BLAST of CV998077 vs. ExPASy Swiss-Prot
Match: 1A110_ARATH (Probable aminotransferase ACS10 OS=Arabidopsis thaliana GN=ACS10 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.976e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = 1
Query:  328 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIE--ARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 828
            I D +      +Y  S G+  L+  +A  +    ++    DP+ + LT GAS A+ ++   L  S N   L P P  P Y   +    G  ++      A  + +    + +    AK +G+ +R +++ NP NP G +L+ EN  A+++F ++  + ++++E++  +V+
Sbjct:  194 ISDGLSISGIASYEPSDGLLELKMAVAGFMTEATKNSVTFDPSQLVLTSGASSAIEILSFCLADSGN-AFLVPTPCSPGYDRDVKWRTGVDIIHVPCRSADNFNMSMVVLDRAFYQAKKRGVRIRGIIISNPSNPMGSLLSRENLYALLDFARERNIHIISNEIFAGSVH 362          
BLAST of CV998077 vs. ExPASy Swiss-Prot
Match: 1A112_ARATH (Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 33/130 (25.38%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  442 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 828
            DP+++ +T G +PA+ ++    +    +  L P P YP +   I    G  L+P +   +  + +  S +++ L  A+ +G  V  ++  NP NP G +L+ E    I+ F +++ + +++DE++  +VY
Sbjct:  176 DPSNMVITAGGTPAIEVLA-FCLADHGNAFLIPTPYYPGFDRDIKFRTGVELIPVHCRSSDNFTVTVSALEQALNQARKRGSKVSGILFSNPSNPVGNILSRETLCDILRFAQEKNIHVISDEIFAGSVY 304          
BLAST of CV998077 vs. ExPASy Swiss-Prot
Match: AAT_SULSO (Aspartate aminotransferase OS=Sulfolobus solfataricus GN=aspC PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.629e-11
Identity = 42/159 (26.42%), Postives = 80/159 (50.31%), Query Frame = 1
Query:  364 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD----EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 828
            Y+ + GI  LR+ IA  +  R G      ++ +T GA PA+ ++  L I + +D ++ P P +  Y+  + L GG   P Y +       G+ ++  +++ ++          + +V  NP NPTG + +  + + IV+  +   ++LL+DE+Y   VY
Sbjct:   68 YTSAFGIDELREKIAQYLNTRYGTDVKKEEVIVTPGAKPALFLVFILYI-NPSDEVILPDPSFYSYAEVVKLLGGK--PIYANLKWSREEGFSIDVDDLQSKISKR------TKMIVFNNPHNPTGTLFSPNDVKKIVDISRDNKIILLSDEIYDNFVY 217          
The following BLAST results are available for this feature:
BLAST of CV998077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
Y1479_METJA7.830e-1224.50Uncharacterized aminotransferase MJ1479 OS=Methano... [more]
1A1C_PHAAU7.830e-1226.381-aminocyclopropane-1-carboxylate synthase (Fragme... [more]
1A12_SOLLC2.278e-1124.541-aminocyclopropane-1-carboxylate synthase 2 OS=So... [more]
1A11_PRUMU2.278e-1127.691-aminocyclopropane-1-carboxylate synthase 1 OS=Pr... [more]
AAT_BACY22.976e-1125.95Aspartate aminotransferase OS=Bacillus sp. (strain... [more]
1A1C_TOBAC2.976e-1125.771-aminocyclopropane-1-carboxylate synthase OS=Nico... [more]
1A13_SOLLC2.976e-1127.691-aminocyclopropane-1-carboxylate synthase 3 OS=So... [more]
1A110_ARATH2.976e-1124.12Probable aminotransferase ACS10 OS=Arabidopsis tha... [more]
1A112_ARATH3.886e-1125.38Probable aminotransferase ACS12 OS=Arabidopsis tha... [more]
AAT_SULSO6.629e-1126.42Aspartate aminotransferase OS=Sulfolobus solfatari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_CTMN-5_T3 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC05_E01_007, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998077 ID=CV998077; Name=CV998077; organism=Citrus sinensis; type=EST; length=832bp
TCCCCTTCTTCTTCTTCAATGGCTCCCACCTCTTCTCCTGCTATCACGGT
CGATTCCCTTAACCCCAAGGTTCTAAAATGCGAGTATGCTGTTCGTGGTG
AGATTGTCTCCATTGCCCAGCGGTTGCAACAAGAGTTACAAACTAACCCT
GGCTCTCATTCCTTTGATGAGATACTGTACTGCAACATTGGAAATCCTCA
GTCTCTTGGTCAGCAGCCAATAACCTTTTTCCGAGAGGTTCTTGCATTAT
GTGACCATCCATCCATTTTGGACAGAAGTGAAACACAAGGTTTGTTCAGT
GCGGATTCTATAGAGCGAGCTTGGCAGATACTGGATCAAATTCCTGGGCG
AGCAACTGGGGCTTACAGTCATAGTCAGGGTATCAAGGGACTGCGTGATA
CAATCGCTGCTGGAATTGAGGCTCGTGATGGTTTTCCTGCTGATCCAAAT
GATATTTTCTTGACAGATGGTGCAAGTCCTGCTGTCCACATGATGATGCA
GTTATTGATAAGATCAGAGAACGATGGAATTCTCTGTCCTATTCCTCAGT
ACCCTTTATACTCTGCTTCAATTGCTCTCCATGGTGGGACCTTGGTGCCT
TACTACCTAGATGAAGCAACAGGATGGGGATTGGAAACTTCGGAGGTTAA
GAAGCAATTGGAGGCCGCCAAGGCCAAAGGTATTACCGTTAGGGCCTTGG
TTGTAATAAATCCAGGCAATCCAACTGGACAGGTTCTTGCTGAAGAAAAC
CAGCGTGCAATTGTGGAGTTCTGCAAAAAGGAGGGTCTTGTTCTTCTTGC
AGATGAGGTATACCAGGAAAATGTTTATGTGC
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