FC871916

Overview
NameFC871916
Unique NameFC871916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12086 contig Csv1_Contig12086:26..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871916 vs. ExPASy Swiss-Prot
Match: RL25_YEAST (60S ribosomal protein L25 OS=Saccharomyces cerevisiae GN=RPL25 PE=1 SV=4)

HSP 1 Score: 138.272 bits (347), Expect = 3.358e-32
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 2
Query:   77 PKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 496
            P  +A    KAV  G   KKA K+RTS TF  PKTLK  R PKY   + P  N+LD Y++++ P+T+E+AMKK+ED N LVF                 +Y++   KVNTL+RP+GTKKAYVRLT D DALD+AN+IG I
Sbjct:    3 PSAKATAAKKAVVKGTNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRIGYI 142          
BLAST of FC871916 vs. ExPASy Swiss-Prot
Match: RL25_KLULA (60S ribosomal protein L25 OS=Kluyveromyces lactis GN=RPL25 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.358e-32
Identity = 69/140 (49.29%), Postives = 90/140 (64.29%), Query Frame = 2
Query:   77 PKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 496
            P  +A    KAV  G   KKA K+RTS +F  PKTLK  R+PKY   + P  N+LD Y++++ P+T+E+AMKK+ED NTLVF                 +Y++    VNTL+RP+GTKKAYVRLT D DALD+AN+IG I
Sbjct:    3 PSTKATAAKKAVVKGTNGKKALKVRTSASFRLPKTLKLARSPKYATKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNTLVFKVSLKANKYQIKKAVKELYEVDVLSVNTLVRPNGTKKAYVRLTADFDALDIANRIGYI 142          
BLAST of FC871916 vs. ExPASy Swiss-Prot
Match: R23A1_CAEEL (60S ribosomal protein L23a 1 OS=Caenorhabditis elegans GN=rpl-25.1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 72/137 (52.55%), Postives = 92/137 (67.15%), Query Frame = 2
Query:   86 QALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 496
            +AL   K V  G+     +++RTSV F RP TLK  R  ++PR SAP  +K+DH++I+++PLTTESAMKKIE++NTLVF                 +Y++QA KVNTLI P   KKAYVRLT D DALDVANKIG+I
Sbjct:   11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQHPLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDVANKIGVI 147          
BLAST of FC871916 vs. ExPASy Swiss-Prot
Match: RL25_PICJA (60S ribosomal protein L25 OS=Pichia jadinii GN=RPL25 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.276e-31
Identity = 70/140 (50.00%), Postives = 87/140 (62.14%), Query Frame = 2
Query:   77 PKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 496
            P  +A    KAV  G    KA K+RTS TF  PKTLK  R PKY R + P   +LD+Y+++  P+ +E+AMKK+ED NTLVF                 +Y++    VNTLIRP+GTKKAYVRLT D DALD+ANKIG I
Sbjct:    3 PSTKAASAKKAVVKGSNGSKALKVRTSTTFRLPKTLKLTRAPKYARKAVPHYQRLDNYKVIVAPIASETAMKKVEDGNTLVFQVDIKANKHQIKQAVKDLYEVDVLAVNTLIRPNGTKKAYVRLTADHDALDIANKIGYI 142          
BLAST of FC871916 vs. ExPASy Swiss-Prot
Match: RL25B_SCHPO (60S ribosomal protein L25-B OS=Schizosaccharomyces pombe GN=rpl25b PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 2
Query:  104 KAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 496
            K V+ G   K A+K+RTS TF RPKTL+  R PKY R S P  ++LD Y+I+  P+ +ESAMKKIED+NTLVF                 +Y + A K+NTLIRP+GTKKA+V+L+ D+DALDVAN+IG +
Sbjct:   11 KTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141          
BLAST of FC871916 vs. ExPASy Swiss-Prot
Match: RL25A_SCHPO (60S ribosomal protein L25-A OS=Schizosaccharomyces pombe GN=rpl25a PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.105e-30
Identity = 67/131 (51.15%), Postives = 87/131 (66.41%), Query Frame = 2
Query:  104 KAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 496
            K V+ G   K AKK+RTS TF RPKTL+  R PKY R S     +LD Y+I+  P+ +ESAMKKIED+NTLVF                 +Y ++  K+NTLIRP+GTKKA+V+L+ D+DALDVAN+IG +
Sbjct:   11 KTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141          
BLAST of FC871916 vs. ExPASy Swiss-Prot
Match: R23A2_CAEEL (60S ribosomal protein L23a 2 OS=Caenorhabditis elegans GN=rpl-25.2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.105e-30
Identity = 76/152 (50.00%), Postives = 91/152 (59.87%), Query Frame = 2
Query:   41 MAPPKGETKKADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 496
            MAP   +  KA      ++  KAV  G      K +RTSV F RPKTL   R P+Y R SAP R+KLD + ++K P TTES+MKKIED+NTLVF                 +Y+++A KVNTLI P   KKAYVRL  D DALDVANKIG I
Sbjct:    1 MAPSSNKVGKA------IQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIKAPHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAYVRLASDYDALDVANKIGFI 146          
BLAST of FC871916 vs. ExPASy Swiss-Prot
Match: RL23A_DICDI (60S ribosomal protein L23a OS=Dictyostelium discoideum GN=rpl23a PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.742e-29
Identity = 66/138 (47.83%), Postives = 86/138 (62.32%), Query Frame = 2
Query:   83 VQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 496
            ++A   A AVK G + K  +K+RTSV F RP TL   + P YPR S     K+D ++ILK PLTTESA +KIE +NT+ F                 MYD++ K+VNTLI P G KKA+V L+P+ +A DVANKIG+I
Sbjct:   32 IKAKAAASAVKKGVSNKSTRKVRTSVIFRRPVTLNNPKKPAYPRRSVNKITKMDQFRILKAPLTTESATQKIEGSNTITFMVDMFANKSQVADAVAKMYDVKVKRVNTLITPRGEKKAFVTLSPEFEAADVANKIGLI 169          
BLAST of FC871916 vs. ExPASy Swiss-Prot
Match: RL23A_TRYBB (60S ribosomal protein L23a OS=Trypanosoma brucei brucei GN=RPL23A PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.671e-23
Identity = 61/155 (39.35%), Postives = 84/155 (54.19%), Query Frame = 2
Query:   32 RRTMAPPKGETKKADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 496
            ++  AP    +KK   K      AK  K  +  K+  K  T   F RP T ++    K     +  +NK D ++I++YPLTT+ AMKKIE+NNTL F                 +Y ++  KVNTLIRPDG KKAY+RL+   DALD ANK+G++
Sbjct:   12 KKNSAPKSAVSKKVAKKGAPAAAAKPTKVVKVTKR--KAYTRPQFRRPHTYRRPATVKPSSNVSAIKNKWDAFRIIRYPLTTDKAMKKIEENNTLTFIVDSRANKTEIKKAIRKLYQVKTVKVNTLIRPDGLKKAYIRLSASYDALDTANKMGLV 164          
BLAST of FC871916 vs. ExPASy Swiss-Prot
Match: RK23_SPIOL (50S ribosomal protein L23, chloroplastic OS=Spinacia oleracea GN=RPL23 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.514e-16
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  170 RPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGI 493
            +PKT KK +  KYPR        LD YQIL+ P+ TE+A+K I D N+L+F                  + ++ +KVNTLIRPDGTKKAY+ L  + +A ++A KIGI
Sbjct:   92 QPKTSKKAKKLKYPR------RILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 193          
The following BLAST results are available for this feature:
BLAST of FC871916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RL25_YEAST3.358e-3250.0060S ribosomal protein L25 OS=Saccharomyces cerevis... [more]
RL25_KLULA3.358e-3249.2960S ribosomal protein L25 OS=Kluyveromyces lactis ... [more]
R23A1_CAEEL7.482e-3252.5560S ribosomal protein L23a 1 OS=Caenorhabditis ele... [more]
RL25_PICJA1.276e-3150.0060S ribosomal protein L25 OS=Pichia jadinii GN=RPL... [more]
RL25B_SCHPO3.713e-3151.9160S ribosomal protein L25-B OS=Schizosaccharomyces... [more]
RL25A_SCHPO4.105e-3051.1560S ribosomal protein L25-A OS=Schizosaccharomyces... [more]
R23A2_CAEEL4.105e-3050.0060S ribosomal protein L23a 2 OS=Caenorhabditis ele... [more]
RL23A_DICDI7.742e-2947.8360S ribosomal protein L23a OS=Dictyostelium discoi... [more]
RL23A_TRYBB1.671e-2339.3560S ribosomal protein L23a OS=Trypanosoma brucei b... [more]
RK23_SPIOL1.514e-1643.5250S ribosomal protein L23, chloroplastic OS=Spinac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK3CF03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871916 ID=FC871916; Name=FC871916; organism=Citrus sinensis; type=EST; length=646bp
TGCCCACTTACACGTAAGTTCTCATCATCGCCGGCGAACAATGGCTCCTC
CAAAAGGTGAGACAAAAAAGGCTGATCCAAAGGTTCAGGCCTTGAAGACT
GCGAAAGCAGTGAAGTCTGGCCGTACCTTTAAGAAGGCCAAGAAGATCCG
GACTTCAGTTACATTTCACCGTCCAAAGACATTGAAGAAGGACCGGAATC
CCAAGTACCCTCGCATCAGTGCTCCACCTAGGAACAAGCTTGACCATTAT
CAGATTCTCAAGTACCCACTCACCACTGAATCAGCAATGAAGAAAATTGA
AGACAACAATACTCTGGTTTTCATTGTTGACATACGGGCTGATAAGAAAA
AGATAAAGGATGCAGTTAAGAAGATGTATGATATCCAGGCTAAGAAAGTG
AATACCTTGATCAGGCCCGATGGCACAAAGAAGGCGTATGTCAGGTTGAC
ACCAGACTCTGATGCTTTGGACGTAGCAAACAAGATTGGAATCATTTAAA
CAATTGATCTTTCATTCACATTTTTGTGTATTTTTTAATCCAAAAAGTTA
GTTATGTTAAGACCTCAAACAAAGATTTGCAAATTTGTTCCTGTTAACAT
TTGTTACTGCTGATTAATATTTTCCTAAAAAAAAAAAAAAAAAAAA
back to top